BAC Information

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BAC

Clone NameMSMg01-137L23
Chromosome8 (Build37)
Map Location 32,190,465 - 32,348,263
singlet/doubletdoublet
Overlap geneDusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330
Upstream geneEG628189, LOC547008
Downstream geneLOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137L23.T7 (MSMg01no137_l23.b1)MSMg01-137L23.TJ (MSMg01no137_l23.g1)
ACCAG343593AG343594
length797751
length of high quality
(start - end)
160 (66 - 225)240 (67 - 306)
definitionCHROMAT_FILE: MSMg01no137_l23.b1 PHD_FILE: MSMg01no137_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:33 2005CHROMAT_FILE: MSMg01no137_l23.g1 PHD_FILE: MSMg01no137_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,190,465 - 32,190,624)(32,348,024 - 32,348,263)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTGCAACACGGAGCCGCGGAATTCTG
CCTCTTACACGACACCAGAAAAAAAGAAATCATGAAATCAGATTGCTCAG
TTTATTCCTTGCCACATTGAGAACAAACCCTAACATGGCTAACTGTGCCC
AAAAAGACAGTCAGGGTCTGACTTACTGAGACTCTCAAATGTGGTTCAAG
GGGATGGATGCAAGTACTTGATTAGAATGCAGAGGTCATCATGGTATAAT
AGTGTACGTTTTATACAGGAAAAGGTAACAGGATATGTAGATGATACCTA
AACTGTGAAGTTTTTTTTTGTAGGGTAGCCTGCCCTTTGTTGAGCTTCCC
TAAATAAACAATGAATCTGTTGTGGAATCCTCTTCCTGTCCAAGCTTATT
CTATGAAGTCATGTTACTGTCGATGCTCGTTCCAGTGATTTACACTATTA
TGAGGTGTGGCCTTTTTGTATTGCCCGTCTTCCTTGCCCCAATATTTGTT
GCCCTCGCGTTACTGTTTTTTCCCACCCTTATTCCTTTTTTCCGTCCCCC
CCTTTTTTTGCTTCCCGCTCCTTTTTCCGCTTATTTACCATATTTCCTTT
CCCTCCCGATCCCTTCTTTACTTTGCCCTGCCCCATATTGCTTCCCACTT
TGTTACCCAATTGTACTCGCATCCTCCCTCACCCTTTTTCCCTCCCTCTT
CCCTCTCCCTTGTTTTTTTTCTTCCATACGATATTGTTCTTTTTTCCCCC
TTCTCCCTTTTCTCCCTTTTTTTCTCTCCCCCTCATTTTCCCCTCCC
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGGTAAGATGTATTTATTTGGGCAGAAAAGATAA
TGATAGGTGGCAGAAAATACTATGTGCGGAGCCTTCTTAATTTTGTAAGA
AACTAAATCTAGCCTTTCCATTTCCTTCAATAAATACCATCTTAACAGAT
TCAGTCATGCAGAGAGTGGGGCTATTTGCTATGCAAGCATGTATCCAAAG
GAATCTAAGATTCTGAAGCCGTCATAAGCCATTTTATAATACTTTAAGGA
GAGGACGATTCTTTAGGCTTAGTGTGACTGCCCCTCCGTCTCTACTGCAG
TCATCTACAAGCTGACTCAGAGTTGACTCGATGTTCATATTCCCCCCTGT
GGTAAAGTCCCTTCAAAGTTGAATTGGAGGTTAAGATGCCATATCCTTCT
GCAAGGTTTTATTTCTGCTAAACTGTTTGCTTGCTCCACTGTCCCTTGCA
CCTGACTACCTAGACCTGTATTTCTGCCTCTTACCGCTCTCCGCAAATTC
CATTTGTCGCATGCTCCGCGAGAACTACTTCTCTTCGGGTAGCCCTGTAT
CAGTGCGCTTAATAAATGGTCCTCAATTTACATTTTTGGCTTTGTCCCGC
GTCCTTTGGTTCTTTTGTCCCCCGCATTGGTCCCTCTTTGTCCCTTTGAA
TACCCAATGTTTGCTTGATCCATCTCTTATTTCACCTCCTTGTTTCCACC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_l23.b1 MSMg01no137_l23.b1 CHROMAT_FILE:
MSMg01no137_l23.b1 PHD_FILE: MSMg01no137_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:33 2005
         (160 letters)



>mm_chr8_32190265_32190824
          Length = 560

 Score =  294 bits (152), Expect = 2e-84
 Identities = 158/160 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaaaaaaagaaatcatgaaatcagattgctcagtttattccttgccacattgagaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaaaaaaagaaatcatgaaatcagattgctcagtttattccttgccacattgagaaca 260

                                                                       
Query: 61  aaccctaacatggctaactgtgcccaaaaagacagtcagggtctgacttactgagactct 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 aaccctaacatggctaactgtgcccaaaaagacagtcagggcctgacttactgagactct 320

                                                   
Query: 121 caaatgtggttcaaggggatggatgcaagtacttgattag 160
           ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 caaatgtggttcaaggggatggatgcaaggacttgattag 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 560
Length adjustment: 8
Effective length of query: 152
Effective length of database: 552
Effective search space:    83904
Effective search space used:    83904
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no137_l23.g1 MSMg01no137_l23.g1 CHROMAT_FILE:
MSMg01no137_l23.g1 PHD_FILE: MSMg01no137_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:33 2005
         (240 letters)



>mm_chr8_32347824_32348463
          Length = 640

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtaagatgtatttatttgggcagaaaagataatgataggtggcagaaaatactatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aggtaagatgtatttatttgggcagaaaagataatgataggtggcagaaaatactatgtg 381

                                                                       
Query: 61  cggagccttcttaattttgtaagaaactaaatctagcctttccatttccttcaataaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cggagccttcttaattttgtaagaaactaaatctagcctttccatttccttcaataaata 321

                                                                       
Query: 121 ccatcttaacagattcagtcatgcagagagtggggctatttgctatgcaagcatgtatcc 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccatcttaatagattcagtcatgcagagagtggggctatttgctatgcaagcatgtatcc 261

                                                                       
Query: 181 aaaggaatctaagattctgaagccgtcataagccattttataatactttaaggagaggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaaggaatctaagattctgaagccgtcataagccattttataatactttaaggagaggac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)