BAC Information

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BAC

Clone NameMSMg01-138F01
Chromosome8 (Build37)
Map Location 106,446,892 - 106,447,280
singlet/doubletsinglet
Overlap geneLOC100041397
Upstream geneLOC100041368, 1600027J07Rik
Downstream geneLOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138F01.T7 (MSMg01no138_f01.b1)MSMg01-138F01.TJ (MSMg01no138_f01.g1)
ACCAG344012AG344013
length705697
length of high quality
(start - end)
394 (55 - 448)477 (84 - 560)
definitionCHROMAT_FILE: MSMg01no138_f01.b1 PHD_FILE: MSMg01no138_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:19 2005CHROMAT_FILE: MSMg01no138_f01.g1 PHD_FILE: MSMg01no138_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTTAANAAATCTATAATTGCGGCCGCTAAACGACTCCTATTTCAAGA
GGATCCGCGGAATTCCTTTGGTCTCCTTAATATGGTTTAGATATCAGTGC
TAAAGTCTTGGTCCCCAGCCGGTGGCATTATTGGCACAGCAGCAGTCCAA
GCAACAAGGAAACAAACATGCCCAGAACCATGAACCAAATCAATGTTTCC
TCTTTTTTAAGTTGATTTGTCAAGTATTTTGCCAATGACAGAAAAGCTGA
CCCAGTGCCCCATTCCATCCCCCACGCTTCAAGCAAAATCAATGGCAAGG
CTTGGGCTGTACTGTTGACAGATTCTGGTAAAGGTGCAGCAACTGTGGGT
GTAAGAAGACCCATGTCTTCAAGGGGGGAGAGAATCTACCCGTGCAACTC
AGGGTGAGAGCAGAGGCCAGGCCCTACATAGCAGAGGAGCTAACTAAGAT
GGGGAATCAGGAAGCTGCCAGCTTTGTAATGCAAGAACCAGAATATCCCC
TAACTTACTCTCTCTTGACACCCAATGGCGATGAAAGTGCCTACCAAAGA
GCATCTGGCTCCTCACCAGCTCTTTAGTCCCACCCAGACATAGCCCTGTT
TCTCCCAGATTATCATCAGCTTCCAAGAGAAAATCCTGCAAAACAAAAGT
TGTAAATGCCATCCACCCTGGTTTCGGGTGCAAGTGCCTGCGTTTTTTAA
ATACC
CACCTNNCNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGGTCGGGAGGCTGA
CCAGTGGTTCCAATGGTTGTAGGTGCTTTAGTTTGCTCCTCTGTTCCTGT
GGTAAAACACTCATCAAAAAACAACTTAGGAGACAACCGGCCACCTTCCT
GGTCAGAGCACAGGTGTCCGCCTGGCCCGAGAGGCTTCTGCCTCAGGTTC
CGCGGAAGCCAGCTTGGTTCCGGGACTCCGAGGAGGGCAGTCTGCACAGG
TGAGAGTGTGGAATACAGAGGCCAGCAGTTTCTGGTTCAGGTGAGAGCCA
CAGAGCTTCTGAGGCGGCGCCATTTTCGGCTCCAGACAACCGGCCACCTT
CCTGGTCAGAGCACAGGTGTCCGCTCGGCCTGGGAGGCTTCTGCCTCAGG
TTCCGCGGAAGCCACCTTGGTTCCCGGACTCCGCGGAAAGTAGTCTACAC
AGGTGAGAGTGTGGACTACTGAAACAACAGCTTCTGTGACAGGCCAAAGC
AACACAGCTTCTGGGAAAGATCCTGTTTTTGGCCTTCATCTTCGGCCAGG
AGGAGGTCCAAACACCAGATAACTGTACACCTTCCCTGAAAAAGGAGACC
TTGCCTGCAGAGAGTGCTCTGACCCCTGAACCCCATAGAATAGAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_f01.b1 MSMg01no138_f01.b1 CHROMAT_FILE:
MSMg01no138_f01.b1 PHD_FILE: MSMg01no138_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:19 2005
         (394 letters)



>mm_chr8_106446687_106447480
          Length = 794

 Score =  721 bits (373), Expect = 0.0
 Identities = 385/389 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcctttggtctccttaatatggtttagatatcagtgctaaagtcttggtccccagc 65
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcctttggccttcttaatatggtttagatatcagtgctaaagtcttggtccccagc 265

                                                                       
Query: 66  cggtggcattattggcacagcagcagtccaagcaacaaggaaacaaacatgcccagaacc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cggtggcattattggcacagcagcagtccaagcaacaaggaaacaaacatgcccagaacc 325

                                                                       
Query: 126 atgaaccaaatcaatgtttcctcttttttaagttgatttgtcaagtattttgccaatgac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atgaaccaaatcaatgtttcctcttttttaagttgatttgtcaagtattttgccaatgac 385

                                                                       
Query: 186 agaaaagctgacccagtgccccattccatcccccacgcttcaagcaaaatcaatggcaag 245
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agaaaagctgacccagtgcaccattccatcccccacgcttcaagcaaaatcaatggcaag 445

                                                                       
Query: 246 gcttgggctgtactgttgacagattctggtaaaggtgcagcaactgtgggtgtaagaaga 305
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 446 gcttgggctgtactgttgacagattctggtaaaggggcagcaactgtgggtgtaagaaga 505

                                                                       
Query: 306 cccatgtcttcaaggggggagagaatctacccgtgcaactcagggtgagagcagaggcca 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cccatgtcttcaaggggggagagaatctacccgtgcaactcagggtgagagcagaggcca 565

                                        
Query: 366 ggccctacatagcagaggagctaactaag 394
           |||||||||||||||||||||||||||||
Sbjct: 566 ggccctacatagcagaggagctaactaag 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)