Query= MSMg01no139_b22.b1 MSMg01no139_b22.b1 CHROMAT_FILE:
MSMg01no139_b22.b1 PHD_FILE: MSMg01no139_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:24 2005
(677 letters)
>mm_chr8_81362845_81363921
Length = 1077
Score = 1270 bits (657), Expect = 0.0
Identities = 669/673 (99%)
Strand = Plus / Minus
Query: 5 gaattcaaaaccaaatcacattcccaccctgagcatcaaatttgatcagcactttgggta 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gaattcaaaaccaaatcaaattcccaccctgagcatcaaatttgatcagcactttgggta 818
Query: 65 gtccatgacttaccaatccttctcttgcaaggcagccctagtctctggagtttcagagtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gtccatgacttaccaatccttctcttgcaaggcagccctagtctctggagtttcagagtt 758
Query: 125 tgcctcagggctggaaagctcttcagtctagctgtcctgtgggtgctgtcattggtcatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tgcctcagggctggaaagctcttcagtctagctgtcctgtgggtgctgtcattggtcatc 698
Query: 185 acatctttttgtcatcattgtcatggttacacactgaagaagccagtgcagaggtactct 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 acatctttttgtcatcatcgtcatggttacacactgaagaagccagtgcagaggtactct 638
Query: 245 gagacactggcagcagtaagtcaagcactcaagttactgacttccacagcccacttggga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gagacactggcagcagtaagtcaagcactcaagttactgacttccacagcccacttggga 578
Query: 305 ccagtgagctcctaaaggcagtggtgccttaatcacagaagctgagaacctactcagcat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ccagtgagctcctaaaggcagtggtgccttaatcacagaagctgagaacctactcagcat 518
Query: 365 gcagagtcctgggactccactggtttcaaacccatgacaagattcacacaagaaacagag 424
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gcagagacctgggactccactggtttcaaacccatgacaagattcacacaagaaacagag 458
Query: 425 caacagaaagatcagccaggccaaatccccaggccacaaaggagacactatcgatccaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 caacagaaagatcagccaggccaaatccccaggccacaaaggagacactatcgatccaat 398
Query: 485 atttccctactaccttttctacctacaagagcaagtaggatgttaatgtccaaacctctt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atttccctactaccttttctacctacaagagcaagtaggatgttaatgtccaaacctctt 338
Query: 545 cacgagtcagccttctgcagtacaggaagtcacaataggaagggaagggcctctgcagtg 604
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 catgagtcagccttctgcagtacaggaagtcacaataggaagggaagggcctctgcagtg 278
Query: 605 ggcatcccatggcacagggtgggtcaagccctttactactggcctgctgccagagacaga 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ggcatcccatggcacagggtgggtcaagccctttactactggcctgctgccagagacaga 218
Query: 665 caccgaactagag 677
|||||||||||||
Sbjct: 217 caccgaactagag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_b22.g1 MSMg01no139_b22.g1 CHROMAT_FILE:
MSMg01no139_b22.g1 PHD_FILE: MSMg01no139_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:24 2005
(647 letters)
>mm_chr8_81210416_81211458
Length = 1043
Score = 1096 bits (567), Expect = 0.0
Identities = 626/649 (96%), Gaps = 7/649 (1%)
Strand = Plus / Plus
Query: 1 ctgtgtaaggtcagagcatgagaggggagaagatgaaagaagactgaaaatgcacggttt 60
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 ctgtgtaaggtcagagcacgagaggggagaaggtgaaagaagactgaaaatgcacggttt 260
Query: 61 tggcattttcatctttgaactttcagttaagccactctgctacacaagaatccccaacaa 120
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tggcattttcatctttgaactttcagttaagccactctgctgcacaagaatccccaacag 320
Query: 121 acagacacaagctggattctagaatcatccattcttcttaagcaacaaggaccctcgtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagacacaagctggattctagaatcatccattcttcttaagcaacaaggaccctcgtat 380
Query: 181 agtagcttcctctaacattgttatgtaacttacttataagtatgcgtatgtaaaatcagg 240
||| ||||||||| || ||||||| ||||||||||||||| ||||||||| |||||||||
Sbjct: 381 agttgcttcctctgacgttgttatataacttacttataagcatgcgtatgcaaaatcagg 440
Query: 241 gtcttctttgttggtgatttgttaatttgggggtgtgaggcaggggaagccaccattgta 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcttctttgttggtgatttattaatttgggggtgtgaggcaggggaagccaccattgtg 500
Query: 301 gggacaagagtttacgaacgaacatggttggtcttagaggcatacatagtctacaaggat 360
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 gggacgagagtttacgaacgaacatggttggtcttagaggcata----gtctacaaggat 556
Query: 361 gcctcctattcacagactgtaagagcaaccggactttaaatttatttctacccttcatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gcctcctattcacagactgtaagagcaaccggactttaaatttatttctacccttcatct 616
Query: 421 cctggatgaccttgggcaagtcattttaatatccctagctgccagtcacaatttattaaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gctggatgaccttgggcaagtcattttaatatccctagctgccagtcacaatttattaaa 676
Query: 481 tattataattaaagtacctcaaggtattattgtgaactattgacgggtgtaaagttcttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tattataattaaagtacctcaaggtattattgtgaactattgacgggtgtaaagttcttg 736
Query: 541 cagtatagtctgacacaatgaacactctatgtcgtcacttgtcatcatcgtcatcat--- 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cagtatagtctgacacaatgaacactctatgtcgtcacttgtcatcatcgtcatcattat 796
Query: 598 catcatcaccacattgtctgtgtatgccaaacaggaggcaaccctttca 646
||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 797 catcatcaccacattgtttgtgtatgccaaacaggaagcaaccctttca 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1043
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1033
Effective search space: 658021
Effective search space used: 658021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
