NNAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAATCCGC
GGAATTCCAGGTTTGCCCCAGATGTTTCTTACATATCTTGCTGTCCTTGA
ATGACGATTGTTAAGAGGAAGTTTGTTTTGTCAGATCATGATATAGTATT
CATTTAGATCTATATCACCTCTGGGAAAAAGGCATAACAAAAGGAGGAAA
TGTCAAAATATGAACCATAACTTTGACGGTGTGACTCTTTGTAGTTCTTT
TTTCACCTGCAATATTCTCATTTTTAAAAAGTTTTCTCATAAAAAAATCT
CTTTATTATTAGTTCATATATTTTTACAATGTATCATACCTTGGTCATAT
TCACTTAAACTTTATTAGTCCCTCCCTTCCTCAGTCACCCGCTTCCCCCC
CCCCCCCCATCCTAGTATTGCCCTTTAAGAGACTATTTTAAAAATAGTCT
TAGCTTCACAGCAAAAGCAAGCGTAGAGTTCCCATGTACCCCTGCTCCCG
GGCATGCGCAGTTGCCTTCGTTAGCGACATCCTGCACCAGCGTGATACAT
TTGTTACAACTGATGAATGTCCTTGACACCGTGTTATCACCCAAAGTCCA
TAATTTACATTAGAGCTAACTTTTGAGGTTTTATAGCCCATTGGCTTTGA
TAAATGTATAATGGCATCTATCCATCTCTTTATTAGCACACAGAATAGTT
C

NTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAAACACCTAAATAACCTG
TGGGGTTCTTATCTACTCTAGGGCCTTCATTCCTCCCCCCCCCCCCAGTT
CTTCCATTAAGTGTCCCAGACCTCTGCCTAACACTTGGCTGTGGGTATCT
GCTTCTGTATCAGTCTGCTGCTGGGGGATGCCTCTCAGAGGACAGTTATG
CTGGCCTCCTGTCTGCAAGCATAATAGAATGCCATTAATAATGTCAGGGA
TTGGTGCTTGTCCATAGGATGGGTTTCAAGTTGGGTCGGTTCTTGGTTGG
CCTTTCCTTAGGTCTCTGCTCTATCCCCACATTTCTTTTAGACAGGACAA
ATTTTGGATCAAAAGTTTTGTTGGTGGGTTGCTGTCCCTATTCTTCCACT
GGGGGTCCTGTCTGGCTCTAGGAAGTGGCCTCTTCAGGTTCCATGTCCCC
ACTGTTGCCTAACAACAGCTAAGGTCACCAGCATTGACTCCCGXXXXXXX
XXXXXXXXXXXXXXXXXXGGAGGTATGAAATCAGTTATTTCTCAGGTCCT
TTTCTTGGATAAAAATTTGGTCACAGGGCAAGAAACTCTCCCTTACGATT
TAGGGGGAAAAACCCTGCTTCTGGAGAAGAGGTAGAAACAAAGAGACTTC
C

Query= MSMg01no139_c01.b1 MSMg01no139_c01.b1 CHROMAT_FILE:
MSMg01no139_c01.b1 PHD_FILE: MSMg01no139_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:25 2005
         (629 letters)



>mm_chr8_111608595_111609624
          Length = 1030

 Score = 1174 bits (607), Expect = 0.0
 Identities = 625/631 (99%), Gaps = 3/631 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttcttac-atatcttgctgtccttgaatgacgattgttaagaggaagtttgttttgt 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtttcttacaatatcttgctgtccttgaatgacgattgttaagaggaagtttgttttgt 260

                                                                       
Query: 60  cagatcatgatatagtattcatttagatctatatcacctctgggaaaaaggcataacaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagatcatgatatagtattcatttagatctatatcacctctgggaaaaaggcataacaaa 320

                                                                       
Query: 120 aggaggaaatgtcaaaatatgaaccataactttgacggtgtgactctttgtagttctttt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaggaaatgtcaaaatatgaaccataactttgacggtgtgactctttgtagttctttt 380

                                                                       
Query: 180 ttcacctgcaatattctcatttttaaaaagttttctcataaaaaaatctctttattatta 239
           |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 381 ttcacctgcaatattctcatttttaaaacgttttctcat-aaaaaatctctttattatta 439

                                                                       
Query: 240 gttcatatatttttacaatgtatcataccttggtcatattcacttaaactttattagtcc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttcatatatttttacaatgtatcataccttggtcatattcacttaaactttattagtcc 499

                                                                       
Query: 300 ctcccttcctcagtcacccgcttccc-cccccccccccatcctagtattgccctttaaga 358
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 500 ctcccttcctcagtcacccgcttcccacccccccccccatcctagtattgccctttaaga 559

                                                                       
Query: 359 gactattttaaaaatagtcttagcttcacagcaaaagcaagcgtagagttcccatgtacc 418
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 560 gactattttaaaaatagtcttagtttcacagcaaaagcaagcgtagagttcccatgtacc 619

                                                                       
Query: 419 cctgctcccgggcatgcgcagttgccttcgttagcgacatcctgcaccagcgtgatacat 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cctgctcccgggcatgcgcagttgccttcgttagcgacatcctgcaccagcgtgatacat 679

                                                                       
Query: 479 ttgttacaactgatgaatgtccttgacaccgtgttatcacccaaagtccataatttacat 538
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 680 ttgttacaactgatgaatgtccttgacacagtgttatcacccaaagtccataatttacat 739

                                                                       
Query: 539 tagagctaacttttgaggttttatagcccattggctttgataaatgtataatggcatcta 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tagagctaacttttgaggttttatagcccattggctttgataaatgtataatggcatcta 799

                                          
Query: 599 tccatctctttattagcacacagaatagttc 629
           |||||||||||||||||||||||||||||||
Sbjct: 800 tccatctctttattagcacacagaatagttc 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1030
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1020
Effective search space:   631380
Effective search space used:   631380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)