Query= MSMg01no139_d05.b1 MSMg01no139_d05.b1 CHROMAT_FILE:
MSMg01no139_d05.b1 PHD_FILE: MSMg01no139_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:31 2005
(461 letters)
>mm_chr8_104959632_104960492
Length = 861
Score = 727 bits (376), Expect = 0.0
Identities = 428/458 (93%), Gaps = 21/458 (4%)
Strand = Plus / Plus
Query: 4 ggaattctcccatcccattctctaacttcctttcacatatttccttaactctttctgtgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcccatcccattctctaacttcctttcacatatttccttaactctttctgtgt 263
Query: 64 tctgtgctcctagataataatatccgttcctttaacttaaaaagtacctgatgagggctg 123
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctgtgctcctagataatcatatccgttcctttaacttaaaaagtacctgatgagggctg 323
Query: 124 gtgagatggctcagcggttaagagcactgactgttcgaatgagttcaaatcccagcaact 183
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 324 gtgagatggctcagcgggtaagagcactgactgttcaaatgagttcaaatcccagcaact 383
Query: 184 gtaaggtgactcacaaccatctgtaacgagatctgacgcccttctctggagtttctgaag 243
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 384 gtaaggtgactcacaaccatctgtaacgagatctgatgcccttctctggagtttctgaag 443
Query: 244 tcagctacagtgtacttacatataataaataaataaataaataaataaataaataaataa 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcagctacagtgtacttacatataataaataaataaataaataaataaataaata----- 498
Query: 304 ataaataaataaatagtacctgatgataacactgaatcccttttattgcatgcagctgaa 363
||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct: 499 ---------------gtacctgatgataacactgaatcccttttattgtatgctgttgaa 543
Query: 364 tgtttatagttttaaatttcatgttaaacgtttcttacatctctttattatttgcaaggc 423
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 544 tgtttatagttttaaatttcatgttaaatgtttcttacatctctttattatttgtaaggc 603
Query: 424 ttttgcctatgatagtgttagattttttttaatgttct 461
||||||||||||||||||||||||||||| ||||||||
Sbjct: 604 ttttgcctatgatagtgttagattttttt-aatgttct 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_d05.g1 MSMg01no139_d05.g1 CHROMAT_FILE:
MSMg01no139_d05.g1 PHD_FILE: MSMg01no139_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:31 2005
(314 letters)
>mm_chr8_105098621_105099334
Length = 714
Score = 530 bits (274), Expect = e-155
Identities = 304/314 (96%)
Strand = Plus / Minus
Query: 1 aatggctgtggacctataacaagctacactcatatagactggatcacacatctgttgaca 60
|||||||||||||||||||||||| ||||||||||| ||| ||||||||||| |||||||
Sbjct: 514 aatggctgtggacctataacaagccacactcatataaactcgatcacacatccgttgaca 455
Query: 61 gttgacacacttttctcatctggagattgaaatgggcacctgtagttgacctcttccctg 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 454 gttgacacacttttctcatctggagattgaaatgggcacctatagttgacctcttccctg 395
Query: 121 tgccctcgtctcctgtacacgctgtgggctggctctgatttggatattattccagtggat 180
||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 394 tgccctcatctcctgtacacactgtgggctcgctctgatttggatattattccagtggat 335
Query: 181 ttggcaggttctgctcattccattactgtatctttcctttgttgtcacatccttgaacca 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttggcaggttctactcattccattactgtatctttcctttgttgtcacatccttgaacca 275
Query: 241 gattggaaattttagccactggactcttgcaaactgttcagctctatttccatctgaaat 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gattggaaattttagcctctggactcttgcaaactgttcagctctatttccatctgaaat 215
Query: 301 gctgctattattca 314
||||||||||||||
Sbjct: 214 gctgctattattca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
