Query= MSMg01no139_e04.b1 MSMg01no139_e04.b1 CHROMAT_FILE:
MSMg01no139_e04.b1 PHD_FILE: MSMg01no139_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:36 2005
(609 letters)
>mm_chr8_13227387_13228395
Length = 1009
Score = 1033 bits (534), Expect = 0.0
Identities = 581/606 (95%), Gaps = 18/606 (2%)
Strand = Plus / Plus
Query: 5 gaattcatgcatctccaattaccaagcccataccctccagtagggctgggactggtctac 64
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 gaattcatgcatctgcaattaccaagcccataccctccagcagggctgggactggtctac 264
Query: 65 acacgcttcactctacagtctctatgaagagaagcttgacagttatcaggaccacctttc 124
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 265 acacgcttcactctacagtctctatgaagagaagcttgacagttatcatgaccacc---c 321
Query: 125 aactaggtgccccgtgcc-ggcccaccagagcccccttgtgtgagcttccagagccacag 183
| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 322 a-------------tgccagg-ccaccagagcccccttgtgtgagcttccagagccacag 367
Query: 184 agcctgtggagacatgagggtcttgctccccaggcctggggtgccaatagactcacctgg 243
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 368 agcctgtggagacatgagggtcttgctcctcaggcctggggtaccaatagactcacctga 427
Query: 244 atcaggtcctgtgaggaggctcaaagagcctgtgtacctcttggggctctgtggtcacac 303
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atcaggtcctctgaggaggctcaaagagcctgtgtacctcttggggctctgtggtcacac 487
Query: 304 agtgtgtgagccagccaggctgtttcaactgtcttaaaacttcctcaggtgagtcaatag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agtgtgtgagccagccaggctgtttcaactgtcttaaaacttcctcaggtgagtcaatag 547
Query: 364 catgactgaaataactacactgatgacatccagtcgatattctgaacgactgactaaagg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 catgactgaaataactacactgatgacatccagtcgatattctgaacgactgactaaagg 607
Query: 424 ccacgaggcccaaccacgcaggacacttgtcattcccaagttcctctctgagggctcctg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ccacgaggcccaaccacgcaggacacttgtcattcccaagttcctctctgagggctcctg 667
Query: 484 agccccatggtctagagggagaaataagaaactcatctgacattaactgttcagcttctc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 agccccatggtctagagggagaaataagaaactcatctgacattaactgttcagcttctc 727
Query: 544 ccaccacagaggggacagcctagcgtctccacatgccccatggcatggtcccacgctgcc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ccaccacagaggggacagcctagcgtctccacatgccccatggcatggtcccacgctgcc 787
Query: 604 ttccac 609
||||||
Sbjct: 788 ttccac 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_e04.g1 MSMg01no139_e04.g1 CHROMAT_FILE:
MSMg01no139_e04.g1 PHD_FILE: MSMg01no139_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:36 2005
(594 letters)
>mm_chr8_13358270_13359264
Length = 995
Score = 1127 bits (583), Expect = 0.0
Identities = 592/595 (99%), Gaps = 1/595 (0%)
Strand = Plus / Minus
Query: 1 acacgcactaggaagtgcctgggctcctgagcctcatggatacctttatgcaagtgtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 acacgcactaggaagtgcctgggctcctgagcctcatggatacctttatgcaagtgtgtg 736
Query: 61 cactaggcctctctgaaacctccattctcattgccccgggcacctgtcaggagtgaggat 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 735 cactaggcctctctgaaacctccattctcattgccctgggcacctgtcaggagtgaggat 676
Query: 121 tgcttatctgatagacagacagttctatctaggcttagtctctaaaatggtcaccagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tgcttatctgatagacagacagttctatctaggcttagtctctaaaatggtcaccagaaa 616
Query: 181 ctaacagcagtgcacactttttgaggagggaagaaggtctggagtgaagggagccatcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ctaacagcagtgcacactttttgaggagggaagaaggtctggagtgaagggagccatcac 556
Query: 241 tgagcatttcccaaacatcacaactccaaaagagcatctcgaggggacacaaccccatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgagcatttcccaaacatcacaactccaaaagagcatctcgaggggacacaaccccatgc 496
Query: 301 accaggcagagtactggtccacacaggatgctagccaatacagcgagcagcaccaacctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 accaggcagagtactggtccacacaggatgctagccaatacagcgagcagcaccaacctg 436
Query: 361 tccatgcaggggcagaacctgtttgtcatggctgacaacgaagccaggagtaaaaggaag 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tccatgcaggtgcagaacctgtttgtcatggctgacaacgaagccaggagtaaaaggaag 376
Query: 421 caaaggaagtgaacagcccgactatgacacacagacacacgtctcatgtcctaacccttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 caaaggaagtgaacagcccgactatgacacacagacacacgtctcatgtcctaacccttc 316
Query: 481 ctacagttcaacttcagctcaaggtcgtctagtcgcccgtgtgtgaaaggcatt-gaagg 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 315 ctacagttcaacttcagctcaaggtcgtctagtcgcccgtgtgtgaaaggcattggaagg 256
Query: 540 ctcacggggcagagagggagcatcactcccagggaagaggctgctgcttcagctc 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctcacggggcagagagggagcatcactcccagggaagaggctgctgcttcagctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 995
Length adjustment: 10
Effective length of query: 584
Effective length of database: 985
Effective search space: 575240
Effective search space used: 575240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
