Query= MSMg01no139_l19.b1 MSMg01no139_l19.b1 CHROMAT_FILE:
MSMg01no139_l19.b1 PHD_FILE: MSMg01no139_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:14 2005
(685 letters)
>mm_chr8_120936336_120937421
Length = 1086
Score = 915 bits (473), Expect = 0.0
Identities = 515/529 (97%), Gaps = 3/529 (0%)
Strand = Plus / Minus
Query: 5 gaattcagttaaaa-tcttccatctcattgtgtataacactcata-tcacaaaagaaaaa 62
|||||||||||||| || | ||||||||||||||||||||||||| || |||||||||||
Sbjct: 532 gaattcagttaaaattcatacatctcattgtgtataacactcatattc-caaaagaaaaa 474
Query: 63 tatctaggtattcatgtctacctagcaatatgcatggagagttacttagaggcaaatata 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tatctaggtattcatgtctacctagcaatatgcatggagagttacttagaggcaaatata 414
Query: 123 cagaaacttataatttgagatacaccatgcttaggcagaccagataaattagtgggtgga 182
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cagaagcttataatttgagatacaccatgcttaggcagaccagataaattagtgggtgga 354
Query: 183 cagagacatggtcaagtaaggagacctgagcattgctggttgaatctaactggaggatac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cagagacatggtcaagtaaggagacctgagcattgctggttgaatctaactggaggatac 294
Query: 243 ataaatacaccccacaaaagctagctcgccctgggtgtgaaacataaaatgttgtgcttt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ataaatacaccccacaaaagctagctcgccctgggtgtgaaacataaaatgttgtgcttt 234
Query: 303 taaaactgtactgaacatggttcagctgtgttactttatctgtactgtgacaaatacctg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 taaaactgtactgaacatggttcagctgtgttactttatctgtactgtgacaaatacctg 174
Query: 363 agaaaaacaacttaggagagactggaaagacggctcgccttgtagtcgaatgtttccccg 422
|||||||||||||||||||||||||||| | | |||||||||||||||||||||| ||||
Sbjct: 173 agaaaaacaacttaggagagactggaaaaatgactcgccttgtagtcgaatgttttcccg 114
Query: 423 ctcttgcagaagatctgagttcagttcccagcccccaagttgagtaactcacaaccacca 482
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 113 ctcttgcagaagatctgagttcagttcccagcccccaagttgagcaactcacaaccacca 54
Query: 483 gtatatttagctttaggggggctggtggcctcttctggtctccataaat 531
|||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 53 gtatctttagttttaggggagctggtggcctcttctggtctccataaat 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1086
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1076
Effective search space: 726300
Effective search space used: 726300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_l19.g1 MSMg01no139_l19.g1 CHROMAT_FILE:
MSMg01no139_l19.g1 PHD_FILE: MSMg01no139_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:14 2005
(607 letters)
>mm_chr8_120829766_120830773
Length = 1008
Score = 1123 bits (581), Expect = 0.0
Identities = 602/609 (98%), Gaps = 2/609 (0%)
Strand = Plus / Plus
Query: 1 tgcttttctgttttttt-ctaactaaaagcgctgactttctataccctttacctctccca 59
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcttttctgttttttttctaactaaaagcgctgactttctataccctttacctctccca 260
Query: 60 cccccctacaactgacagtctctgaaggactcctggcctcctgtgagcttcagctggaat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccccctacaactgacagtctctgaaggactcctggcctcctgtgagcttcagctggaat 320
Query: 120 ccaagatccactccatgacggtgggttccaaatgagagaagcccacttaataaagctgac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaagatccactccatgacggtgggttccaaatgagagaagcccacttaataaagctgac 380
Query: 180 caactaatgttttaaaaaatgtagagatggctcagtggttaagaacactgactgctcttc 239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 caactaatgttttaaaaaatgtagacatggctcagtggttaagaacactgactgctcttc 440
Query: 240 cagaggtcctgagttcaaatcccagcaactacatggtggctcacaaccatctgtaatggc 299
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 cagaggtcctgagttcaaatcccagcaactacatggtggctcacaaccgtctgtaatggc 500
Query: 300 ctccagtgccctcttctggtgtgtctgaagacagctactgtgttattcatatacatgaaa 359
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 cttcagtgccctcttctggtgtgtctgaagacagttactgtgttattcatatacatgaaa 560
Query: 360 ta-tttttttcaaaaaataaaaattaaaaaaatccaagcagtggtggcatactcctttaa 418
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatttttttcaaaaaataaaaattaaaaaaatccaagcagtggtggcatactcctttaa 620
Query: 419 tcccagcacttgggaagcagaggcaggcagatttctgagttcgaggccagccaggtctac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcccagcacttgggaagcagaggcaggcagatttctgagttcgaggccagccaggtctac 680
Query: 479 aaaatgcaaggttgttcaagagactcctaacacattacggactgtccatattgctcttgg 538
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaatgcaaggttgttcaagaggctcctaacacattacggactgtccatattgctcttgg 740
Query: 539 ttgtcctactctgccccagagattgaagataagttcccactgctaaagaccatagaggac 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgtcctactctgccccagagattgaagataagttcccactgctaaagaccatagaggac 800
Query: 599 attagatcc 607
|||||||||
Sbjct: 801 attagatcc 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1008
Length adjustment: 10
Effective length of query: 597
Effective length of database: 998
Effective search space: 595806
Effective search space used: 595806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
