BAC Information

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BAC

Clone NameMSMg01-139L24
Chromosome8 (Build37)
Map Location 91,490,840 - 91,612,472
singlet/doubletdoublet
Overlap geneSall1, LOC100041089
Upstream geneLOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985
Downstream geneEG625801, EG384862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139L24.T7 (MSMg01no139_l24.b1)MSMg01-139L24.TJ (MSMg01no139_l24.g1)
ACCAG345070AG345071
length725728
length of high quality
(start - end)		444 (37 - 480)586 (69 - 654)
definitionCHROMAT_FILE: MSMg01no139_l24.b1 PHD_FILE: MSMg01no139_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:15 2005CHROMAT_FILE: MSMg01no139_l24.g1 PHD_FILE: MSMg01no139_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,612,045 - 91,612,472)(91,490,840 - 91,491,425)
sequence
AATTTGCGGCGCTNTACGACTCCTATATTTCGAAATCCGCGGAATTCACT
TAGGGGATCTCTCCACAGGGTTAAGCTTTGGGAGGCAGCACTCAGCTCCC
CCAACATCCTGAAGACGCTAGACTTCAGGCTTTTTCTTTTTGCAGCAATC
TGCCTGTGGCTCCAATAAAAACAGCTCATGTCTGGCCTCCTGGCTCAGTG
TCAATCTCCAGGGGATAACCCTGGAAAGGGTGTGTGTGTGTGTGTGCGTG
TGCTAAGTCAATAAAGGGCACCACTAGACACTGGCAGAAATGGGTACCAT
TAGGAAGAGCAACACAGCTACATGGGACAAAACTTCAGCATTCCATTTTT
CCTGCATGGATGTTTGGGTTATAGTTGCCAGGTGCGCTATAGGCCATGTT
GGAGTCCTTCTGTCCCTACACAACAGACATCTGTAGTCCTTTCCCACCCT
GACTCCAGATGTTGCCAAGTGTCATCTAGGAAGCAAAGTCAAATAACAGG
ATTAAAATCTTCCTGAGAGCTTTTCACTCAATGTAGAGTTTGTAGAAGGA
GAAAGTATTAACCTTTGTTCTTCTGGCTATACTGAGAGATCGTCACACAG
TTAGTTTACTGCCAGCTTTTTTTGTAGTCATTATAGTTGTCTTGTATCAG
CCAACATCGCTCCCTCTATTTGTTGTAAAATCCTCTCTTACTACTCGCCC
CTAATATCCCTCCACTAATTACTAC

GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGCTCACTCAACCTTCCTCCTCTTTGTTCCCC
AGACTCCTTCTGGGGCCTTCCAGCTCTCCCACCTTGACTGCTTGTGACAC
ACAAGAAGCATGGAATCTTGGCTTGGGGGCTGTGACCTGCATTACATTTT
CATAAATGGCATAAGCAACTTTAGAAAGCAAGTCCTCAGAGCCCTGGGTT
GGGATTTGTCTGAAGCACGTTAAAATAATTTGCCAAAGGTGGACACTGTG
AAATGTTCAGCATTAAAGTTCTACATCTGTCTCAAAGTCTTTTCTGAAGC
GGGTGTTCAGTGAAGAGTCGAACTGAACAGACAATGTCTTCTAAATGTTT
AAGAACCACAGAAACCTAGGAGCTGTCACTGTCTGTCCCTCCACAGCTGA
TCCTAATCCTTATCTTTGCACCAACACCCCAGAAAAGCAGGTAGGTGTAC
CAGTTACCCTTTAGCTGACTTGAGGCTTAGTGGCCCAAAAGCCTTTATGC
AAAAACACAGCAAGCAAGTTGGCATTCAAGCTTTGCTGATGAGCAAATGG
CAGCTTGTCTGGCACTGGCCAGGGCCCCTGTCCCTGTGTAGAGTCTTCAG
ACCTGCAGCGTCCTTGATCCAGAAGTTCCAAGTCTTCGAGGGCCCATAAA
TGTGAATAGATACCTAACTACATAGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_l24.b1 MSMg01no139_l24.b1 CHROMAT_FILE:
MSMg01no139_l24.b1 PHD_FILE: MSMg01no139_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:15 2005
         (444 letters)



>mm_chr8_91611629_91612472
          Length = 844

 Score =  812 bits (420), Expect = 0.0
 Identities = 426/428 (99%)
 Strand = Plus / Minus

                                                                       
Query: 17  ggggatctctccacagggttaagctttgggaggcagcactcagctcccccaacatcctga 76
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ggggatctgtccacagggttaagctttgggaggcagcactcagctcccccaacatcctga 785

                                                                       
Query: 77  agacgctagacttcaggctttttctttttgcagcaatctgcctgtggctccaataaaaac 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 agacgctagacttcaggctttttctttttgcagcaatctgcctgtggctccaataaaaac 725

                                                                       
Query: 137 agctcatgtctggcctcctggctcagtgtcaatctccaggggataaccctggaaagggtg 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 agctcatgtctggcctcctggctcagtgtcaatctccaggggataaccctggaaagggtg 665

                                                                       
Query: 197 tgtgtgtgtgtgtgcgtgtgctaagtcaataaagggcaccactagacactggcagaaatg 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tgtgtgtgtgtgtgcgtgtgctaagtcaataaagggcaccactagacactggcagaaatg 605

                                                                       
Query: 257 ggtaccattaggaagagcaacacagctacatgggacaaaacttcagcattccatttttcc 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ggtaccattaggaagagcaacacagctacatgggacaaaacttcagcattccatttttcc 545

                                                                       
Query: 317 tgcatggatgtttgggttatagttgccaggtgcgctataggccatgttggagtccttctg 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgcatggatgtttgggttatagttgccaggtgcgctataggccatgttggagtccttctg 485

                                                                       
Query: 377 tccctacacaacagacatctgtagtcctttcccaccctgactccagatgttgccaagtgt 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 484 tccctacacaacagacatctgtagtcctttcccaccctgactccagatgttgccaagtgc 425

                   
Query: 437 catctagg 444
           ||||||||
Sbjct: 424 catctagg 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no139_l24.g1 MSMg01no139_l24.g1 CHROMAT_FILE:
MSMg01no139_l24.g1 PHD_FILE: MSMg01no139_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:15 2005
         (586 letters)



>mm_chr8_91490640_91491625
          Length = 986

 Score = 1110 bits (574), Expect = 0.0
 Identities = 583/586 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctcactcaaccttcctcctctttgttccccagactccttctggggccttccagctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctcactcaaccttcctcctctttgttccccagactccttctggggccttccagctctc 260

                                                                       
Query: 61  ccaccttgactgcttgtgacacacaagaagcatggaatcttggcttgggggctgtgacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaccttgactgcttgtgacacacaagaagcatggaatcttggcttgggggctgtgacct 320

                                                                       
Query: 121 gcattacattttcataaatggcataagcaactttagaaagcaagtcctcagagccctggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcattacattttcataaatggcataagcaactttagaaagcaagtcctcagagccctggg 380

                                                                       
Query: 181 ttgggatttgtctgaagcacgttaaaataatttgccaaaggtggacactgtgaaatgttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgggatttgtctgaagcacgttaaaataatttgccaaaggtggacactgtgaaatgttc 440

                                                                       
Query: 241 agcattaaagttctacatctgtctcaaagtcttttctgaagcgggtgttcagtgaagagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcattaaagttctacatctgtctcaaagtcttttctgaagcgggtgttcagtgaagagt 500

                                                                       
Query: 301 cgaactgaacagacaatgtcttctaaatgtttaagaaccacagaaacctaggagctgtca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgaactgaacagacaatgtcttctaaatgtttaagaaccacagaaacctaggagctgtca 560

                                                                       
Query: 361 ctgtctgtccctccacagctgatcctaatccttatctttgcaccaacaccccagaaaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtctgtccctccacagctgatcctaatccttatctttgcaccaacaccccagaaaagc 620

                                                                       
Query: 421 aggtaggtgtaccagttaccctttagctgacttgaggcttagtggcccaaaagcctttat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggtaggtgtaccagttaccctttagctgacttgaggcttagtggcccaaaagcctttat 680

                                                                       
Query: 481 gcaaaaacacagcaagcaagttggcattcaagctttgctgatgagcaaatggcagcttgt 540
           |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 681 gcaaaaacacagcaagcaagttgggattcaagctttgctgatgagcaaatggtagcttgt 740

                                                         
Query: 541 ctggcactggccagggcccctgtccctgtgtagagtcttcagacct 586
           |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 741 ctggcactggccagggcccctgtccctgtggagagtcttcagacct 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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