BAC Information

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BAC

Clone NameMSMg01-139N18
Chromosome8 (Build37)
Map Location 35,129,240 - 35,197,387
singlet/doubletdoublet
Overlap geneDctn6, LOC100042777, Mboat4
Upstream geneLOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769
Downstream geneLeprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139N18.T7 (MSMg01no139_n18.b1)MSMg01-139N18.TJ (MSMg01no139_n18.g1)
ACCAG345154AG345155
length763720
length of high quality
(start - end)		129 (69 - 197)551 (71 - 621)
definitionCHROMAT_FILE: MSMg01no139_n18.b1 PHD_FILE: MSMg01no139_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:23 2005CHROMAT_FILE: MSMg01no139_n18.g1 PHD_FILE: MSMg01no139_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,129,240 - 35,129,368)(35,196,841 - 35,197,387)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAGGATCCGCGGAAT
TCTGCAGCTTTACTCAGTCAAACTGTTCAGCCAAAAATGTCTTCACTTTT
TAGAGATCAAGGAAGCAGCTGTTAAAAATCTGAATCCACACTTAGGAAGC
ACTAAAACCCAACAACGATAGACACAGCCGGGGGGGGGGGGTCGGGGGGG
GNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTTCTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTGTTTT
TTTNTTTTTTGTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTGTTTTGGGT
TTCTGTTTTTTTTTTTCCCCCCCCTTTCTTTTTTTTCTTTTTTTTTCTTT
TTTTTTTTTATGGTTTTTTCCCTTTCTTTTTTTTTTAGCAGACCTTNTTT
TTTCTTCTTTTTTCTCTCCTTTTTTTTTTTTCTTCTTTTTTTTTTGTTTT
TCCCCCCTTTTTTTTTTTCCTCTCTTTTATTTTTCTTCGCTTTTTTTCCT
TTTTTTTTTTTTTTTTTCTTATGTATATTTCTTCTTTTTTTTTTTTTTTT
CTATTCTTTTTTATTTCTTTTTTTTTTCTCACCGCCTTTCTTTTTTTTTT
TTATTTTTATTTTATTTTTTCTCTAATTTCATTTTCTTCTTCTCTTTTTT
TTTTTTTTTTTTTCTTTTTATTTTTCTTTCCTTGTTTTTTTTTTCCTTTC
TATTTTTTTTTTG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATCTCCCGTTTTTAAATGACCATAGCCTGT
ATTTGGGGAGAGATTATGTTTCCGGTGCCTTAAAATTAACCCTAGCACTC
CTTAATTAAATTGGTTCCTAAGTTGCTAGTGTATACTTTGAAAGGAAGGG
GAAACACTGTTGGGGGAAACTGGCGTAATCAAATGCTCTGACTCCGCTAC
AAAACACTGCACAGGTCCCGCTGCCACCCATGGGTTTGCGTCTCTCACCT
CCCGTGCAAGCAAACTGCCTTGTGAACAGTGTGCTTCCTGCTGAAAGGGC
TCTTACAAATGGAGTCCTTAACTGTCCAGATAATCTAAGATTGTGAGCAG
TAAGAGCAGGCTGCAGAACACCAGCAGAAGCCTGTAATTACTCTTCCTAC
GCTTTAAGTAGGAGATGGATCTGTGCTTGGCCCTCACAGACCTTAATTTC
TGGCTCACTAAGTAGCTCCTCGCCATTTGCCTTTAGTTACAAAGTGTTCA
GGGTTGAAGGTTTAGTTTTTCCAATTACAGTAATTTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGNNNCCNNNCNTTTTTTTTTTCCCCCCCCTCCCC
TCTTTTTTTTTTTCCCCCCCTCCCCCTTTTTTTTTTTTTCTCTCCCCTTT
TCTTTTTTTTTTCCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_n18.b1 MSMg01no139_n18.b1 CHROMAT_FILE:
MSMg01no139_n18.b1 PHD_FILE: MSMg01no139_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:23 2005
         (129 letters)



>mm_chr8_35129040_35129568
          Length = 529

 Score =  250 bits (129), Expect = 3e-71
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaactgttcagccaaaaatgtcttcactttttagagatcaaggaagcagctgttaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaactgttcagccaaaaatgtcttcactttttagagatcaaggaagcagctgttaaaaa 260

                                                                       
Query: 61  tctgaatccacacttaggaagcactaaaacccaacaacgatagacacagccggggggggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgaatccacacttaggaagcactaaaacccaacaacgatagacacagccggggggggg 320

                    
Query: 121 gggtcgggg 129
           |||||||||
Sbjct: 321 gggtcgggg 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no139_n18.g1 MSMg01no139_n18.g1 CHROMAT_FILE:
MSMg01no139_n18.g1 PHD_FILE: MSMg01no139_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:23 2005
         (551 letters)



>mm_chr8_35196673_35197623
          Length = 951

 Score = 1058 bits (547), Expect = 0.0
 Identities = 547/547 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctcccgtttttaaatgaccatagcctgtatttggggagagattatgtttccggtgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 atctcccgtttttaaatgaccatagcctgtatttggggagagattatgtttccggtgcct 656

                                                                       
Query: 61  taaaattaaccctagcactccttaattaaattggttcctaagttgctagtgtatactttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 taaaattaaccctagcactccttaattaaattggttcctaagttgctagtgtatactttg 596

                                                                       
Query: 121 aaaggaaggggaaacactgttgggggaaactggcgtaatcaaatgctctgactccgctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aaaggaaggggaaacactgttgggggaaactggcgtaatcaaatgctctgactccgctac 536

                                                                       
Query: 181 aaaacactgcacaggtcccgctgccacccatgggtttgcgtctctcacctcccgtgcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aaaacactgcacaggtcccgctgccacccatgggtttgcgtctctcacctcccgtgcaag 476

                                                                       
Query: 241 caaactgccttgtgaacagtgtgcttcctgctgaaagggctcttacaaatggagtcctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 caaactgccttgtgaacagtgtgcttcctgctgaaagggctcttacaaatggagtcctta 416

                                                                       
Query: 301 actgtccagataatctaagattgtgagcagtaagagcaggctgcagaacaccagcagaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 actgtccagataatctaagattgtgagcagtaagagcaggctgcagaacaccagcagaag 356

                                                                       
Query: 361 cctgtaattactcttcctacgctttaagtaggagatggatctgtgcttggccctcacaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cctgtaattactcttcctacgctttaagtaggagatggatctgtgcttggccctcacaga 296

                                                                       
Query: 421 ccttaatttctggctcactaagtagctcctcgccatttgcctttagttacaaagtgttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ccttaatttctggctcactaagtagctcctcgccatttgcctttagttacaaagtgttca 236

                                                                       
Query: 481 gggttgaaggtttagtttttccaattacagtaatttgtgtgtgtgtgtgtgtgtgtgtgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 gggttgaaggtttagtttttccaattacagtaatttgtgtgtgtgtgtgtgtgtgtgtgt 176

                  
Query: 541 gtgtgtg 547
           |||||||
Sbjct: 175 gtgtgtg 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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