Query= MSMg01no139_o15.b1 MSMg01no139_o15.b1 CHROMAT_FILE:
MSMg01no139_o15.b1 PHD_FILE: MSMg01no139_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:28 2005
(648 letters)
>mm_chr8_51835551_51836598
Length = 1048
Score = 1191 bits (616), Expect = 0.0
Identities = 640/648 (98%)
Strand = Plus / Minus
Query: 1 atgaaatccatacagtagttagctaacaatgcgaagatatttaataaatctttcctgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 848 atgaaatccatacagtagttagctaacaatgcgaagatatttaataattctttcctgtgc 789
Query: 61 cccgaggacttaaaaataagaagattatttaaactgtgtgttgatttattgaaaagtcta 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 788 cccgaggacttaaaaataagaagattatttaaactgtgttttgatttattgaaaagtcta 729
Query: 121 ttataaggaggaagactgagtctgattttctgacatgttttgctagtgagtatgaactag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ttataaggaggaagactgagtctgattttctgacatgttttgctagtgagtatgaactag 669
Query: 181 aacaaatttggcaaagagcagaatggtgaacctaggcaaatcttgtatatttctattcag 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 668 aacaaatttggcaaagagcagaatggtgaacctaggcaaatcatgtatatttctattcag 609
Query: 241 tgaggggaacgtatcagtatcatggacttgctgcaggaatatactgcaaattgggtgctt 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 608 tgaggggaacgtatcagtatcatggacttgctgcaggaatatcctgcaaattgggtgctt 549
Query: 301 tgaaagtacagtgatgtatcgacttatactccagatgtatgattccagagtcaagttact 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 548 tgaaagtacagtgatgtatcgactcatactccagatgtatgattccagagtcaagttact 489
Query: 361 ggtaggaacatgctgtctctgaaaactctaaaggagagtcttttcttgctattgtctctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ggtaggaacatgctgtctctgaaaactctaaaggagagtcttttcttgctattgtctctc 429
Query: 421 tgaaactgaacaccaatatgccctcaccttagcactcagcacttcagtctctgcctttct 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaaactgaacaccaatatgtcctcaccttagcactcagcacttcagtctctgcctttct 369
Query: 481 ggcttcatgtctttgttttatatataattcatgcctgtacatgacaactctctttatcca 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggctttatgtctttgttttatatataattcatgcctgtacatgacaactctctttatcca 309
Query: 541 ttatgctggcttagggactaggatgataacctcacttaacattagcccctctataatcat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttatgctggcttagggactaggatgataacctcacttaacattagcccctctataatcat 249
Query: 601 cctatatccacatgagttcgtatagccatttttgagaggtctgatctt 648
||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 248 cctatatccacatgagttcatatagccatttttgagaggtctgatctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_o15.g1 MSMg01no139_o15.g1 CHROMAT_FILE:
MSMg01no139_o15.g1 PHD_FILE: MSMg01no139_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:28 2005
(643 letters)
>mm_chr8_51738872_51739915
Length = 1044
Score = 1222 bits (632), Expect = 0.0
Identities = 641/644 (99%), Gaps = 1/644 (0%)
Strand = Plus / Plus
Query: 1 agaagaaatgcttctaacttcactgtttcctaatcaagtttaaccttgttaccttacata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagaaatgcttctaacttcactgtttcctaatcaagtttaaccttgttaccttacata 260
Query: 61 attacttatatatgtgtaagttacttaaatactaattttaaacataatttatcaaaggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attacttatatatgtgtaagttacttaaatactaattttaaacataatttatcaaaggct 320
Query: 121 aatatcaaattgttaaaatttagactttcaatgattggcatccttatcttattaaaagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatatcaaattgttaaaatttagactttcaatgattggcatccttatcttattaaaagct 380
Query: 181 ggacataaatgactgtaagttcaaatgctaaataaacttcagttcgcagttccacattca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacataaatgactgtaagttcaaatgctaaataaacttcagttcgcagttccacattca 440
Query: 241 ttaattggtgatgtacactaatacaagttcattgatcttcttcaacctctcccttgtgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaattggtgatgtacactaatacaagttcattgatcttcttcaacctctcccttgtgag 500
Query: 301 taattt-cttcttaaggagacattattagatacaataagtggtggctttccacttcaaca 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taattttcttcttaaggagacattattagatacaataagtggtggctttccacttcaaca 560
Query: 360 aatgagtctggcttgactgccgaaacatccagttaatagtgaaatataaagtgacttaca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgagtctggcttgactgccgaaacatccagttaatagtgaaatataaagtgacttaca 620
Query: 420 taatttttcatactgtaacatctaagtcattacaatcctggaaaaattattctatttgta 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 taatttttcatactgtaacatctaagtcatttcaatcctggaaaaattattctatttgta 680
Query: 480 gtcattcagagatgatttattttgaaatctacatctttaggatattgattaatccaactg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcattcagagatgatttattttgaaatctacatctttaggatattgattaatccaactg 740
Query: 540 agaatcatacatatttctcatggccttctttttatacttgacatagaaaattttaaatat 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agaatcatacatatttctcatggccttctttttatacttgacatagaaaattttaaatat 800
Query: 600 atattataatattaaagattttttaaaaatattcatttgattaa 643
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 801 atattataatattaaagatttttaaaaaatattcatttgattaa 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1044
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1034
Effective search space: 654522
Effective search space used: 654522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
