Query= MSMg01no139_p06.b1 MSMg01no139_p06.b1 CHROMAT_FILE:
MSMg01no139_p06.b1 PHD_FILE: MSMg01no139_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:31 2005
(227 letters)
>mm_chr8_11868900_11869526
Length = 627
Score = 393 bits (203), Expect = e-114
Identities = 218/223 (97%)
Strand = Plus / Minus
Query: 5 gaattcttggcccctccccctttccctcccctgcctgtcccatcaattcatggtcatccc 64
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaattcttggcccctccccctctccctcccctgcctgtcccatcaattcatggtcatccc 368
Query: 65 tgcccttctcagacctaccctcccagtgccctctcatatgtgaaactgggaattcagagg 124
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 367 tgcccttctcagacccaccctcccagtgccctctcataagtgaaactgggaattcagagg 308
Query: 125 ccacgtcctaggagctatgtaagaggcctgatcttcctgtgattgaaccatttgtgtatg 184
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 307 ccacgtcctaggagctatgtaagaggcctgatcttcctgtggttgaaccatttgtgtatg 248
Query: 185 agggaggggcagatatgaagggattcaagatactattcacaca 227
||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 247 agggaggggcagatatgaagggattcaagatacaattcacaca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space: 134724
Effective search space used: 134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no139_p06.g1 MSMg01no139_p06.g1 CHROMAT_FILE:
MSMg01no139_p06.g1 PHD_FILE: MSMg01no139_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:31 2005
(337 letters)
>mm_chr8_11698397_11699130
Length = 734
Score = 340 bits (176), Expect = 5e-98
Identities = 246/278 (88%), Gaps = 20/278 (7%)
Strand = Plus / Plus
Query: 76 aggcacaggagttcatagagccgtaaggaaaacccgccagccagcaggagagcaaggcgt 135
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcataggagttcatagagccgtaaggaaaacccgccagccagcaggagagcaaggcga 320
Query: 136 gaacaccaggaaccggaaaggcgaatccggtaagccacg-----agggggt------ggg 184
|||||||||||||||||||| || ||| ||||||||||| |||||| |||
Sbjct: 321 gaacaccaggaaccggaaagccggatcgggtaagccacgggggcggggggtggggggggg 380
Query: 185 gaa-a---ggcactctcaggtcatcatcacctcaacactattaacacgtggtcct-tcct 239
||| | |||||||||||| ||||| |||||||||||||||||| |||| || ||||
Sbjct: 381 gaagagggggcactctcagg---tcatcgcctcaacactattaacacatggt-ctctcct 436
Query: 240 ctccccatcacgtggcactgatcttgacagttacatatccccaccagggaatgtggacac 299
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctctccttcacgtggcactgatcttgacagttacatatccccaccagggaatgtggacac 496
Query: 300 cactgtgagcttttaggagaacagtttgggaggattta 337
|||||||||||||| |||||||||||||| ||||||||
Sbjct: 497 cactgtgagcttttgggagaacagtttggaaggattta 534
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 734
Length adjustment: 9
Effective length of query: 328
Effective length of database: 725
Effective search space: 237800
Effective search space used: 237800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
