BAC Information

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BAC

Clone NameMSMg01-140J12
Chromosome8 (Build37)
Map Location 100,068,047 - 100,068,541
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC333331, LOC546090
Downstream geneLOC636859, EG384885, LOC100041173, EG636915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140J12.T7 (MSMg01no140_j12.b1)MSMg01-140J12.TJ (MSMg01no140_j12.g1)
ACCAG345686AG345687
length747717
length of high quality
(start - end)
237 (43 - 279)495 (74 - 568)
definitionCHROMAT_FILE: MSMg01no140_j12.b1 PHD_FILE: MSMg01no140_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:22 2005CHROMAT_FILE: MSMg01no140_j12.g1 PHD_FILE: MSMg01no140_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATT
CTTTGTTCTCCCATGAGCCCCATTTTTTAATGAGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCCGAAACTTTGGAGTTTCATTAGG
TCCCATTTGTCAATTCTCGATCTTACAGCACATGCCATTGCTGTTCTGTT
CATCGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCTCCACTTTC
TCCTCTATTAGTTTCATTGTCTCTGGTTTTATGTGAAGCTCCTTGATTCA
TCTATATTCGACCTCTATTCCTCGACATAAGCATGATTTGACTCTCATTC
CCTCTACCGACAATCCACCCTCTGTGTCCCCCCCACTTGCCCACTATTTC
TGTCTCCCCTTTTACTGGCCCGCTTTTTGCTCCCCTTGATCTATTATTTT
TATCTCCCTTTGTCCTTCCGCGTATTTCCTTCTGTCTATTCTTCCTCCCT
TTTCTTTTTTTTCCTCCCTTCCTATCTCCTATTTTACTCCACTCCCCCTC
CTTCTCTATACAATATATCTTTCCACATCCCCCTCTTTAACCCTCCCCTT
TTTCTACCCTTACTCCATTTTCCTATTTTCTTTTACTCCTCTTTCCT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATGGCTCATTTGATAAATGCAAAACC
AGCTTAACGTTTGATTTTCTTCAAATAGAACTCAAAATAGGATTAACTGT
GTCATCCCTCAGAAATGAAGCCGTTTCTAATATGTCTTCAGTGAAGGAGA
AGAGGAAGATGAAAACATTCTACAAATTACAATAACCTGACGCCTGCTCA
CTAAACAATACCATATTAATTTTCAATGTTCTGCACATGGCTGAATGGAA
AATCCCTTAATCCCAGGTCCCATTTTACTTTTGCCTCATTGTCTCTGTCC
CCTCATCATATCACTTTCAGAAATCACCAGTGGCTGTGCATTCTCTTCCA
CTTTATTACTGCCAGAGAAGTCATAGACTAGTTAATGCAGATCTGCTTCC
CAGAGGGATGCTAAAATGGATTTACTTTCTCTATTTTGAGTGATTGACTT
TGGGAAATTCTCTTCTTTATCAGTTACTAACAGAGAAACAGAACCTTCCA
GGAGTGACAGTAAACTAACCACACAGTCTCCAGTTCTATAGGCATAAAGA
CGTTTAAGAGGCTTGAGATTATCTGGACCATTCATGAGTATGAAAATCAG
ATGACCCCATGAGCCCCAGTGAGACGATGTGTTGATGCTTACATTACTGG
CTCCTGGAGATCTGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_j12.g1 MSMg01no140_j12.g1 CHROMAT_FILE:
MSMg01no140_j12.g1 PHD_FILE: MSMg01no140_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:22 2005
         (495 letters)



>mm_chr8_100067847_100068741
          Length = 895

 Score =  957 bits (495), Expect = 0.0
 Identities = 495/495 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatggctcatttgataaatgcaaaaccagcttaacgtttgattttcttcaaatagaactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aatggctcatttgataaatgcaaaaccagcttaacgtttgattttcttcaaatagaactc 636

                                                                       
Query: 61  aaaataggattaactgtgtcatccctcagaaatgaagccgtttctaatatgtcttcagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aaaataggattaactgtgtcatccctcagaaatgaagccgtttctaatatgtcttcagtg 576

                                                                       
Query: 121 aaggagaagaggaagatgaaaacattctacaaattacaataacctgacgcctgctcacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aaggagaagaggaagatgaaaacattctacaaattacaataacctgacgcctgctcacta 516

                                                                       
Query: 181 aacaataccatattaattttcaatgttctgcacatggctgaatggaaaatcccttaatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aacaataccatattaattttcaatgttctgcacatggctgaatggaaaatcccttaatcc 456

                                                                       
Query: 241 caggtcccattttacttttgcctcattgtctctgtcccctcatcatatcactttcagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 caggtcccattttacttttgcctcattgtctctgtcccctcatcatatcactttcagaaa 396

                                                                       
Query: 301 tcaccagtggctgtgcattctcttccactttattactgccagagaagtcatagactagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tcaccagtggctgtgcattctcttccactttattactgccagagaagtcatagactagtt 336

                                                                       
Query: 361 aatgcagatctgcttcccagagggatgctaaaatggatttactttctctattttgagtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aatgcagatctgcttcccagagggatgctaaaatggatttactttctctattttgagtga 276

                                                                       
Query: 421 ttgactttgggaaattctcttctttatcagttactaacagagaaacagaaccttccagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttgactttgggaaattctcttctttatcagttactaacagagaaacagaaccttccagga 216

                          
Query: 481 gtgacagtaaactaa 495
           |||||||||||||||
Sbjct: 215 gtgacagtaaactaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)