BAC Information

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BAC

Clone NameMSMg01-140K10
Chromosome8 (Build37)
Map Location 79,136,098 - 79,213,669
singlet/doubletdoublet
Overlap genenone
Upstream gene1700007B14Rik, LOC666036, LOC100039185, EG631594, LOC666226
Downstream geneLOC100039211, LOC384847, Nr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140K10.T7 (MSMg01no140_k10.b1)MSMg01-140K10.TJ (MSMg01no140_k10.g1)
ACCAG345730AG345731
length710710
length of high quality
(start - end)
248 (66 - 313)228 (73 - 300)
definitionCHROMAT_FILE: MSMg01no140_k10.b1 PHD_FILE: MSMg01no140_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:26 2005CHROMAT_FILE: MSMg01no140_k10.g1 PHD_FILE: MSMg01no140_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,136,098 - 79,136,345)(79,213,442 - 79,213,669)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATCCGCGGAAT
TCACAAGAATGCCGCCATAAACACATGAAAAGAAAGTTGAAGTCTGCATA
AGATTAAGTGATATTCTGCTATAGTAGATACTATGAGGGGATTTCTGTTT
CTGCTATGGTGGCTAGGAAACTGGAGGGACTGATAATACTTCTGAAAACT
AAAAATACTGAATTAAATATATAACTGTCATGTTAAAAACATTGATGATG
TGACAAAATAGGAAAGTGTTGTCAATCAGAAATCAAGTGGTAAAAGACTA
TAAATAGAGGCAGAATATTAGTTCTGCTCTTGTTGCACAAACACTTTATC
TGAACCAATACATTGGGATCTGATTTGCACAGCCTCTTGAAATTGTATGT
ATCATAAACAAATCATGGAGTTAACTCAAATTAAGAAATAATAAATACTT
CTCAGCCAATAACTGGGGATCTTGTATGGCTGCACAACATAGAAATGATT
CATAAGTAGGTGCCCCCTCCTACCTCCCAACATCCCCTATGGCCTTTACG
ATACATGCCTTGATACTACCGATAACTTTCGTGACCCCTTGCTTCTGACA
TTCTGTGCTCACAATTCAGTTTTTGCTCATATTTATGTCCCATTTTCCCA
TCACATTTGTGCCTTTTTACACCTTTTCCTTATTTCTTATCTGAACATGT
TTTTGCACCT
AATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATTAACTGAACAACTGCTTATGTCAAT
TTGAAAGTAGGCAATTCTCCTTTGAAGGGCACAAAGAAATAATTTATGTG
TCATTAACAACCACTTGTAAGGAATTCAATTTAATTATTTTCCATGAAAG
AATCTCAACAAAATAGTTACAAATCAAAACATGGTTTTAAAAATCTACAC
TAATTTGTATTTTATAATTTTACTTTTGATATTTACTTATGATAAGATTA
AGCCTAAGCTTATATTCTCTCTGATTAAGAGTATACTAAAGGAATGTTTT
TAGTAGACTATTAATGTAAAGTAATTCCAAGAACTTTCTAACTTACATCT
CTATATATGCACATATCAACAATGACACATATATGGCAAACGCTAATGAC
CTCCTTTTATGATTGATTCTGAGCTATATTCATCTTTTCATAATGCGTTT
CCTCATATCATATCTATACAGGACGTTATGTGGTCAATTATTATTGACTT
CCTCCTAGCGTAAGTTACCGGTGCAGACATGCAAGTCCTCTCTCTACTAC
ATCACTCCTCCCTCCTTCTCTCCCTTCTTCTTTCTTTTTTCCTTCATCAC
TCTCTTCTTCCTCTCTTCTCTTCCTCACTTTTCTTTTACTCATCCTCCCT
CTCTCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_k10.b1 MSMg01no140_k10.b1 CHROMAT_FILE:
MSMg01no140_k10.b1 PHD_FILE: MSMg01no140_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:26 2005
         (248 letters)



>mm_chr8_79135898_79136545
          Length = 648

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataaacacatgaaaagaaagttgaagtctgcataagattaagtgatattctgctatagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaacacatgaaaagaaagttgaagtctgcataagattaagtgatattctgctatagt 260

                                                                       
Query: 61  agatactatgaggggatttctgtttctgctatggtggctaggaaactggagggactgata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatactatgaggggatttctgtttctgctatggtggctaggaaactggagggactgata 320

                                                                       
Query: 121 atacttctgaaaactaaaaatactgaattaaatatataactgtcatgttaaaaacattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacttctgaaaactaaaaatactgaattaaatatataactgtcatgttaaaaacattga 380

                                                                       
Query: 181 tgatgtgacaaaataggaaagtgttgtcaatcagaaatcaagtggtaaaagactataaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatgtgacaaaataggaaagtgttgtcaatcagaaatcaagtggtaaaagactataaat 440

                   
Query: 241 agaggcag 248
           ||||||||
Sbjct: 441 agaggcag 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no140_k10.g1 MSMg01no140_k10.g1 CHROMAT_FILE:
MSMg01no140_k10.g1 PHD_FILE: MSMg01no140_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:27 2005
         (228 letters)



>mm_chr8_79213242_79213869
          Length = 628

 Score =  395 bits (204), Expect = e-114
 Identities = 222/228 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattaactgaacaactgcttatgtcaatttgaaagtaggcaattctcctttgaagggcac 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 428 aattaactgaacaactgcttatgtcaatttgaaagtaggcaaatctcctttgaagggcac 369

                                                                       
Query: 61  aaagaaataatttatgtgtcattaacaaccacttgtaaggaattcaatttaattattttc 120
           ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| 
Sbjct: 368 aaagaaataatttatgtgtcattaaaaagcacttgtaaggaattcaatttaattattttt 309

                                                                       
Query: 121 catgaaagaatctcaacaaaatagttacaaatcaaaacatggttttaaaaatctacacta 180
           |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 308 catgaaagaatctcaaaaaaatagttacaaatcaaaatatggttttaaaaatctacacta 249

                                                           
Query: 181 atttgtattttataattttacttttgatatttacttatgataagatta 228
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atttgtattttataattttacttttgatatttacttatgataagatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)