Query= MSMg01no141_f12.b1 MSMg01no141_f12.b1 CHROMAT_FILE:
MSMg01no141_f12.b1 PHD_FILE: MSMg01no141_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:38 2005
(704 letters)
>mm_chr8_9411121_9412224
Length = 1104
Score = 1299 bits (672), Expect = 0.0
Identities = 696/704 (98%)
Strand = Plus / Plus
Query: 1 acacattgcagatgcaaaaggtgattataaaattgggatattctttatccatggaaaaat 60
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacattgcagatgtaaaagatgattataaaattgggatattctttatccatggaaaaat 260
Query: 61 caccagaatctctcagtaagaaaataacaaaaatgttcagtttatgattgattttgaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccagaatctctcagtaagaaaataacaaaaatgttcagtttatgattgattttgaaaa 320
Query: 121 ggagttttgcttgatactttcctctactgtgcattttaacttagaaatattgttttatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagttttgcttgatactttcctctactgtgcattttaacttagaaatattgttttatac 380
Query: 181 aatgaattttcaacagggttctaatcctttcgaaacatagacatgcaggcagaacaaccg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgaattttcaacagggttctaatcctttcgaaacatagacatgcaggcagaacaacct 440
Query: 241 gtgagcattcatatcactcttctgggtggtaggtaactgacaggttgtaatttaacattt 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gtgagcattcatatcactcttctgggtggtaggtaactgacaggttggaatttaacattt 500
Query: 301 ctatttcacagacatcagaagactgtgttaaacagctccagtatgagaaccagcaggaaa 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 ctatttcacagacatcagaagactgtgttaaacagcaccagtatgagaaccagcaggaaa 560
Query: 361 ccatcaactgggcaagcacctcaccttcattttcctgggtctgagcatgcttaaattcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccatcaactgggcaagcacctcaccttcattttcctgggtctgagcatgcttaaattcca 620
Query: 421 caaatctgtcattttatcttcatccttattatcctacaccatggttttataagacagtat 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaatctgtcattttatctttatccttattatcctacaccatggttttataagacagtat 680
Query: 481 atgcgttactacattatgttcaatatagccaatgtattttatactcaatatacatcagat 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgcgttactacattatgtccaatatagccaatgtattttatactcaatatacatcagat 740
Query: 541 tcaatatagtttattgaagtgattctgtccatctcactactactggtacagtgcaccttc 600
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaatatagtctattgaagtgattctgtccatctcactactactggtacagtgcaccttc 800
Query: 601 atatactgtcttagtcattgttctacttgagacaccatgacagcagcaaatctaatatag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atatactgtcttagtcattgttctacttgagacaccatgacagcagcaaatctaatatag 860
Query: 661 ggaagcatttaattagggctggcttacaatttagaggtttagtc 704
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ggaagcatttaattagggctggcttacaatttagaggtttagtc 904
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no141_f12.g1 MSMg01no141_f12.g1 CHROMAT_FILE:
MSMg01no141_f12.g1 PHD_FILE: MSMg01no141_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:38 2005
(265 letters)
>mm_chr8_9484851_9485515
Length = 665
Score = 447 bits (231), Expect = e-130
Identities = 260/277 (93%), Gaps = 12/277 (4%)
Strand = Plus / Minus
Query: 1 ctgaaaagattgtgctttggcttttaaactaatatctgggtattttgttaagtacccctt 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct: 331 ctgaaaagattgtgctttggcttttaaactaatatttgggtattttgttaagtatcactt 272
Query: 61 gtttataatgcaagcagagtgatttttaactc------------gtgatttaactagtga 108
|||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 271 gtttataatgcaagcagagtgatttttaactcgtgatttaactagtgatttaactagtga 212
Query: 109 tttaactagtgatttaactagtgtttgcattgtggttctttaacaaagatagaggggaag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tttaactagtgatttaactagtgtttgcattgtggttctttaacaaagatagaggggaag 152
Query: 169 ctgaacagttgttttcaaaatgccaggactggatgcttgttaattcaaatgaaaagaatg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ctgaacagttgttttcaaaatgccaggactggatgcttgttaattcaaatgaaaagaatg 92
Query: 229 gacaaagatggctgttctatgttatcctaaagcagaa 265
|||||||||||||| ||||| ||||||||||||||||
Sbjct: 91 gacaaagatggctgctctatattatcctaaagcagaa 55
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space: 167936
Effective search space used: 167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
