BAC Information

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BAC

Clone NameMSMg01-141K23
Chromosome8 (Build37)
Map Location 48,629,746 - 48,630,446
singlet/doubletsinglet
Overlap geneRwdd4a
Upstream geneMlf1ip, Ccdc111, Casp3, Irf2, Enpp6, Stox2, 4930448N21Rik, D030016E14Rik
Downstream geneLOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd, Odz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141K23.T7 (MSMg01no141_k23.b1)MSMg01-141K23.TJ (MSMg01no141_k23.g1)
ACCAG346495AG346496
length1,0641,209
length of high quality
(start - end)
690 (121 - 810)692 (89 - 780)
definitionCHROMAT_FILE: MSMg01no141_k23.b1 PHD_FILE: MSMg01no141_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:22 2005CHROMAT_FILE: MSMg01no141_k23.g1 PHD_FILE: MSMg01no141_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCTCTTTNNNNNCCACTGGGCGCTAAGACTCCTAAGGGAGAGGATCCG
CGGAATTCTTTGTTTTGTGTCCACCCTTATATTCTCTGTGTAACAGCCCT
GGCTGTCCTGTAACCCGATCTAGACCAGGCTGCCCTCAAACTCAGAGATC
TGCCTGCCTCTGCTCCTGAGTGCTGGGATCAAAGGCGTGTGCTACCACCA
CTGCCTGGCTAATTCTTTAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTATCTATCTATCTATATATATATACAGTGTAAGTACACTGTAGCTGTC
TTCAGACACCCCCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGA
GCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGT
CTGTGCTCTTAATCACTGAGCCATCTCTCTATTCTTGGAGCATTTGAGTC
AGAGCCCCATTGTTTACAGTACAAAAATACTGCATTTATTGCTACTTGGA
AAGAATGACTCACAGAGCAATTATAAATATTCTCACTGAGGGACATTAGA
AAAATAGACAAAGCACATTGTCCTACCTGAACACTGTAACATGTGGGTTT
TATTTGCCTATGTACATCTAAAAGCTATGTGAAATAGTTCCCACTTGCAG
TCTGACACATCGCTCCATCTTAGTATAGTTGTTGGATTTTTTTTCCCTAT
AATTAACTTAATTATACAATAAGTCTTCAGAACAGAATTCCCGTGTATAT
GAAAACAGACTCCTCATGAAAAAGATTGTAAGCTGCCACTCAAATCAACA
GCTATGTTTGTCCCCCATTCTTTCTCTTAAGATTTGCAAATGGTTATCCC
TCTGAATTTTCCTAATTAAGAAAATTGGGAAAACTACACTGTTGCGTGGT
AATACCCTTACACCATAATGGTTGCCTGCCCGGGCAAGTGTGTGTTGTGT
TTTTCCCTCCCCTTCTTCCTTTCTTCTCCTTTCTATTCCTCTTATATTCG
TACCTATTTTTCTCTTCTCTTTTTCTCTTTTTTTTTTTCTCTTCTTCCTC
TTTTTCTTCTTCCA
NCCCTTTCCTTTNNNNACCATGGATGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTATAAGTCAGCTGAGTTGA
GTGAATGCAGGTCCATGCCCCAGAGGAAGCTGAAGCCAGACAATAAGGAG
CCAGAAGATTAGAAAAAATTGCCAGAGTTTGATGCCAAACAGAGCAATTC
AGTGAGAGGCCAAGAGAAGCCAGTTTACATCTGTCAGCTTGGCAAGGAGA
TTGAGCCAGAACAGCTGATTTGAACCCGCCAGCCAGAGTTCAGCAAGGGT
GAACTAATTCAGCAGTAAGCCTCCGAGACAACGGTTACATCAGGCAAATA
AAAGACACTTTTTACATCTTGCTATCCCTTTGTGTCTGCGCTCCACTCTT
GCAACTCTCCAAGACTAAATAAACAAATAAATGAATACCTCATTGTGGAA
GCTGTACGGTGTCACAATGTGTCCTACAGTACACCCTTTTGTTACATCTT
TACTTGTAAATGATAAATTGCAAAGCCATTGGTCTGGTTTGAGGTCTATG
GCTTCTACTACACCGTCAATACTGGATCTTCACCAGGACTCCGCTCAGAT
AGCCTGTTGTTGTCCTGTGTCATGGGGATCCTGCAGCTTTGGATCTGCAG
GACTGGCCCCTTCATGTGCTCATAGCCAAGGATAGATGATGGGGTGGGAC
CACAATGTATTTTAAACTGGCCTTGATTTTTGACTTTCTCTCTTCTGTAA
CACTATAGAAATGTCTTAAACTTGCCCTGATTTGTGATATTTTCTTGTTG
GCTTAGATTTTTCAAAACCTACTTTATTCAGGGACCTTAAATGCTTTACC
CTCCCATCTAGCCTACCGGGTAATGGAAAGGAAAGGTTTATGGGGCAAAG
GGGGGTGTGAAAATGTTAAAAATTCCAGACTTCCTTGCCTAAATACCAGC
GGTTTCATTCCCCCCTATCTTCATTGGTAGACTCATTCTTCTAAACAAAC
CCCGTTTCCTGGATCACGCGCCATAAGCATGACACCATTTTTTTCTGAGA
GAAATCCTTTCGGGTTTTGGCAATTATTCGAAAAACCCCACTAAAATACC
CCTGTGTGGTTGTGCACCCCTCTCAAAATTTCTTTTGGGGGATTTTCCTC
TTTTTTTACTCCCCCTCTAAAGTCGCTCCTTTTTAAATAAATCTCCCTTG
TGGTGACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_k23.b1 MSMg01no141_k23.b1 CHROMAT_FILE:
MSMg01no141_k23.b1 PHD_FILE: MSMg01no141_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:22 2005
         (690 letters)



>mm_chr8_48629558_48630646
          Length = 1089

 Score = 1199 bits (620), Expect = 0.0
 Identities = 676/702 (96%), Gaps = 13/702 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaccaggctgccctcaaactcagagatctgcctgcctctgctcctgagtgctgggatc 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tagaccaggctggcctcaaactcagagatctgcctgcctctgctcctgagtgctgggatc 248

                                                                       
Query: 61  aaaggcgtgtgctaccaccactgcctggctaattctttagtctctctctctctctctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aaaggcgtgtgctaccaccactgcctggctaattctttagtctctctctctctctctctc 308

                                                                       
Query: 121 tctctctctctctatctatctatctatatatatat------------acagtgtaagtac 168
           ||||| | | | ||| ||| ||| |||||||||||            |||||||||||||
Sbjct: 309 tctctatatatatatatatatatatatatatatatatatatatatacacagtgtaagtac 368

                                                                       
Query: 169 actgtagctgtcttcagacacccccagaagagggcatcagatcccattacagatggttgt 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 actgtagctgtcttcagacacccccagaagagggcatcagatcccattacagatggttgt 428

                                                                       
Query: 229 gagccaccatgtggttgctgggatttgaactcaggacctctggaagagcagtctgtgctc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 429 gagccaccatgtggttgctgggatttgaactcaggacctctggaagagcagtcagtgctc 488

                                                                       
Query: 289 ttaatcactgagccatctctctattcttggagcatttgagtcagagccccattgtttaca 348
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 489 ttaatcactgagccatctctctattcttggagcatttgagtcagagccccattggtcaca 548

                                                                       
Query: 349 gtacaaaaatactgcatttattgctacttggaaagaatgactcacagagcaattataaat 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gtacaaaaatactgcatttattgctacttggaaagaatgactcacagagcaattataaat 608

                                                                       
Query: 409 attctcactgagggacattagaaaaatagacaaagcacattgtcctacctgaacactgta 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 attctcactgagggacattagaaaaatagacaaagcacattgtcctacctgaacactgta 668

                                                                       
Query: 469 acatgtgggttttatttgcctatgtacatctaaaagctatgtgaaatagttcccacttgc 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 acatgtgggttttatttgcctatgtacatctaaaagctatgtgaaatagttcccacttgc 728

                                                                       
Query: 529 agtctgacacatcgctccatcttagtatagttgttggattttttttccctataattaact 588
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 729 agtctgacacatcgctccatcttagtatagttgttggattttttt-ccctataattaact 787

                                                                       
Query: 589 taattatacaataagtcttcagaacagaattcccgtgtatatgaaaacagactcctcatg 648
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 788 taattatacaataagtcttcagaaaagaattcccgtgtatatgaaaacagactcctcatg 847

                                                     
Query: 649 aaaaagattgtaagctgccactcaaatcaacagctatgtttg 690
           |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaggattgtaagctgccactcaaatcaacagctatgtttg 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1089
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1079
Effective search space:   733720
Effective search space used:   733720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)