BAC Information

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BAC

Clone NameMSMg01-142M23
Chromosome8 (Build37)
Map Location 85,988,165 - 85,988,428
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc
Downstream geneLOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142M23.T7 (MSMg01no142_m23.b1)MSMg01-142M23.TJ (MSMg01no142_m23.g1)
ACCAG347323AG347324
length1,2021,198
length of high quality
(start - end)
264 (134 - 397)274 (132 - 405)
definitionCHROMAT_FILE: MSMg01no142_m23.b1 PHD_FILE: MSMg01no142_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:57 2005CHROMAT_FILE: MSMg01no142_m23.g1 PHD_FILE: MSMg01no142_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTCTNTNNATTTCATTGGCGCTAAGACTACTATAGGGAGAGGATCCGC
GGAATTCTCTGGTATCTCTGACCATTTAAGTGTGAATCTGGGCATTGCCA
TTAGGAAACTCCCCGTAGAGATGGTAGTGTCCCTAAAGAAGACTTTTAGC
ACTCCTGTTTAGTTCGAATGGTTCCCATTTCTTCAGAGGTAATTTCAAGG
GAAACTATTTGATTATTCTTTAAAAGTTCGTGCCGGTTGGATTAATTCAG
CCCATTGGCAACAGTGGAAGGCTTTGGTGGAGACACTTAGATCACATCAT
GTGTGGTTAATGGCTTATGTTTGTCTCATGATTCCTCTTTGCTGGTACAC
TTTCAGTACTTTACTTAGTCCATCTCATTTCTCCTCACAACAACCCAAGA
GTATTTCTGAAACAGAGGCAAAATGCTTGGCTTAAGACCCACAGCATATC
TGGGATTCAGATCTAGGTATAACAAGTTCAAAACCAGCACAGAGCGTCTG
AGTTCATCCACACACTGGGGCATAAGAACACGCTGCTGCAGGTTGCCATT
GCATTTTTATGTCTGCGTGTTCATTCACTCCAGCATGGAAGTAAAGACTC
ATCATCTTAGGGTGTTTTTCCTGGGTGCCATTCCACCTGGGTTGTGAGTA
AGGCTCTCTCATTGACCTAGAGCTCGCCCATCAGGTGAGGCTGGTCATCC
AATGAGTTCCAGGAATCCTCCTGCCTCTCACTTCCCAGTGCTGGGATTAT
AAACTTGCACCACCAAGCCCCACATTTGTACCCAGTTTCTGGAGATGGAA
TTTCAATAGCCGTGATTTTGAAGAAAGCATTTAATAAGTCTAGTTATCTC
CCCAAGCCTTGCATATTTTAATGTTTTAAGGGGGGGTTAATTCTGTCCCA
GTATGGTCTTCAAGGTTTCGTTCATGTTGTTTACTTTTTTGTAGGATTTG
GTTTCTTTGTCCTTAAATGTGTTGTGTTTTTGGCCCTCCATTTCTATTTT
TGTCTAAATATTTGTTTGGGTCTCTTAACTTAAGTTATTTTAATATACTT
GTTTCCTCCTTTTTTTTATTTAATTTTCATTGGGCTTTGTTCTTTTTTTT
GTGTGTTATAACATTAATGTTTCCTTATGTTGTTTTGTTATTTTTTGGTG
TTATATTAATGTTTTTTTTCTTTTTGTCTTCTTTTTATAATATATTATTT
TG
CCCCCTTTTTTATTTCGAAGTGAGCCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACCTTATGAGATTCCNGNGGCAANG
NAGAGAGACCCTCTCTCACCTTATCAAACAGAATGCCCCACCTCTCAGGT
TTATCCATTTGAATATTTGGTCCCCAATTGGTGGAACTGTTTGGGAAGAC
TTAGGGGGTGTGGTCTTGTTATAGGAGGAGGTGAGTCACTGGTGGTGGGC
TTTGAGATCTCAAAACCTACACTAGGCCCAGTTTCTCTCTCTGACTCCTG
GTTTATCTCAAGATGTGAGCTCTCAGCTACTGCTCCAACTTCATGGCTGC
CTGACTGCCTGCTGCCTCATTCCCTGCCATGATGGTCACGGATTCCAACC
CTTTGGATATTTAACCCCCAAATAAACTGTTCTTGTATAACTTGCTTTGG
CCAACGTGTCTCCACCCAGCAATAGAGAAAACCTCACTAGCCTAAGTTTT
GTTGTGTCTTTAGATTTATTTCCTTTATATGTAAGACTGTCTTGTCTGCA
TGTGTGTTTGTGCACTATGTGTATGCCTGGTGCCTGCAGAAGTCAGAAGA
GGGCAGGGGATTCCCTGAAACTGGAGTTACAGGTAATTTTGAGCCACCAT
GTAAGTGCTGGGAATTGAATTTAGGTCTTCCAGCAACAAAAGCTCTTAAC
TCCATGAAGCAGTCTTAGGAGTGTGTGGCCTCAGGCCTGCTTGTCACACC
TGGAAGCCTTCATATTAAGAAAACTTGTAAACTGTGCTGTGGTGGTGCAC
ACCTTTATTCCCACCCATCTCTTTGGAGGCAAAAGCAAGGCAGATTTCTG
ATCTGCCCCATTGAGAATGAATTCCCCTGCATCGCACTTTTTGAAGTTTC
TGAAGACTGGATTTCAGGGAACCTGAATAGTATTGCTTGCCTTAAATAAA
TGTATGCTTCTATTCCAGGTCGTGGTGGGTCCAACTTTCCTTTAATTCCC
CATCCATTTGGGTAAGGTCCTAATTTCCAGCCGTCTTTTTTCTGAAATTT
TTAAAGGGCCTCTCCTCTGTTTTTTACTCTTTTCATTACGGTTATTTTCC
CCTGTATATATCCCCGTTGTCTTTTTTACTTACATAAAATCTCCTTTCTC
TTAACATGGTTTCCTCTGTCTCTTTCCCCTGTCGTATTACATATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_m23.b1 MSMg01no142_m23.b1 CHROMAT_FILE:
MSMg01no142_m23.b1 PHD_FILE: MSMg01no142_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:57 2005
         (264 letters)



>mm_chr8_85987965_85988628
          Length = 664

 Score =  511 bits (264), Expect = e-149
 Identities = 264/264 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaagaagacttttagcactcctgtttagttcgaatggttcccatttcttcagaggtaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaagaagacttttagcactcctgtttagttcgaatggttcccatttcttcagaggtaat 260

                                                                       
Query: 61  ttcaagggaaactatttgattattctttaaaagttcgtgccggttggattaattcagccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaagggaaactatttgattattctttaaaagttcgtgccggttggattaattcagccc 320

                                                                       
Query: 121 attggcaacagtggaaggctttggtggagacacttagatcacatcatgtgtggttaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attggcaacagtggaaggctttggtggagacacttagatcacatcatgtgtggttaatgg 380

                                                                       
Query: 181 cttatgtttgtctcatgattcctctttgctggtacactttcagtactttacttagtccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttatgtttgtctcatgattcctctttgctggtacactttcagtactttacttagtccat 440

                                   
Query: 241 ctcatttctcctcacaacaaccca 264
           ||||||||||||||||||||||||
Sbjct: 441 ctcatttctcctcacaacaaccca 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)