Query= MSMg01no143_c08.b1 MSMg01no143_c08.b1 CHROMAT_FILE:
MSMg01no143_c08.b1 PHD_FILE: MSMg01no143_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:37 2005
(540 letters)
>mm_chr8_24855813_24856754
Length = 942
Score = 965 bits (499), Expect = 0.0
Identities = 528/541 (97%), Gaps = 8/541 (1%)
Strand = Plus / Minus
Query: 5 gaattcttgagatg----tccgctaccatctggtccccgcctctggcttatctgaagagc 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gaattcttgagatggaaa---gctaccatctggtccccgcctctggcttatctgaagagc 686
Query: 61 tctcaacttccctgtccttcagaacataacaggtaggaagagagagagaaaagcagaaca 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 685 tctcaacttccctgtccttcagaacacaacaggtaggaagagagagagaaaagcagaaca 626
Query: 121 gactccccttcttagccttgtccactatgccaactggccatgtctcctgtagccattggg 180
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 625 gactccccttcttagccttgtccactatgccagctggccatgtctcctatagccattggg 566
Query: 181 agagcaacagagccatggagtcctccataggcagagctacaatgtgaggacttcccatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agagcaacagagccatggagtcctccataggcagagctacaatgtgaggacttcccatct 506
Query: 241 ggaatgcataaggtccttgggcattctgagtaaaatgacaagcataatagaatggaagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggaatgcataaggtccttgggcattctgagtaaaatgacaagcataatagaatggaagca 446
Query: 301 tctaatttcttctaactg-aaaaaaaaaaagtttaatctttgctgctcagccaagagcac 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctaatttcttctaactggaaaaaaaaaaagtttaatctttgctgctcagccaagagcac 386
Query: 360 atatcaaaggcaccccacaaagccatcaccagggactcaagtgacctaaattatttccaa 419
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atatcaaaggcacatcacaaagccatcaccagggactcaagtgacctaaattatttccaa 326
Query: 420 cattcacccagaatggtgccatccccaggagacccagagcagaggagcaggccatatgtg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cattcacccagaatggtgccatccccaggagacccagagcagaggagcaggccatatgtg 266
Query: 480 aatctggtcggatgactttgctgtcctaggttcattctaggagaaccaggtatatgaaat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatctggtcggatgactttgctgtcctaggttcattctaggagaaccaggtatatgaaat 206
Query: 540 t 540
|
Sbjct: 205 t 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 942
Length adjustment: 10
Effective length of query: 530
Effective length of database: 932
Effective search space: 493960
Effective search space used: 493960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_c08.g1 MSMg01no143_c08.g1 CHROMAT_FILE:
MSMg01no143_c08.g1 PHD_FILE: MSMg01no143_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:37 2005
(339 letters)
>mm_chr8_24743532_24744270
Length = 739
Score = 563 bits (291), Expect = e-165
Identities = 327/339 (96%)
Strand = Plus / Plus
Query: 1 tttccaggaattctcatctgcatcgataagggacttgaggttggttctctgaatctggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccaggaattctcatctgcatcgataagggacttgaggttggttctctgaatctggaa 260
Query: 61 ctcgccacacttctatctacagctgttatcatccaaacaagttctagccctttctggaac 120
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ctcaccacacttctatctacagctgttatcttccaaacaagttctagccctttctggaac 320
Query: 121 ttgagcaagtcaagtgcagtggacgcgaaccatgttcatttctgtgtctgtggggtaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgagcaagtcaagtgcagtggacgcgaaccatgttcatttctgtgtctgtggggtaggc 380
Query: 181 actccctgtagctggcagatgtgtaaaagctcacgtaggtggaccataagaatggaggca 240
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 actccctgtagctggcaaatgtgtagaagctcacgtaggtggaccataagaatggaggca 440
Query: 241 accctctgccatggagcccgtattagacctcatcagaggaggagatcagccttctgatcc 300
|||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct: 441 accctctgccatggagcccgcattatacctcgtcagaggaggagatcagccttctgatct 500
Query: 301 aggatgggaccctcccttaaggagtcattttcttttgca 339
||| ||||||||||| ||||||| ||||||||||||||
Sbjct: 501 gggacgggaccctcccctaaggagccattttcttttgca 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
