Query= MSMg01no143_d04.b1 MSMg01no143_d04.b1 CHROMAT_FILE:
MSMg01no143_d04.b1 PHD_FILE: MSMg01no143_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:41 2005
(403 letters)
>mm_chr8_50379917_50380725
Length = 809
Score = 690 bits (357), Expect = 0.0
Identities = 391/405 (96%), Gaps = 7/405 (1%)
Strand = Plus / Minus
Query: 5 gaattccaatacatccctacctctgtgttctttgcttctcctgaatccctttctaaagga 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattccaatacatagctacctctgtgttctttgcttctcctgaatccctttctaaagga 462
Query: 65 aactgtctgttattctccgtccatttccctttactcttggtctcagactcagtgttttaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aactgtctgttattctccgtccatttccctttactcttggtctcagactcagtgttttaa 402
Query: 125 gg-----ttcatacacccactcgggcagcatttctctgctttcctcaaaagtatggagtg 179
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ggttcatttcatacacccactcgggcagcatttctctgctttcctcaaaagtatggagtg 342
Query: 180 tgttgatggtacttgttgctgagtaaaacagactcgctgaagaaaatagacaataaaata 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgttgatggtacttgttgctgagtaaaacagactcgctgaagaaaatagacaataaaata 282
Query: 240 tgtaaatctattatagctgtgtcaaaggaatcaagaatttggtgagaataaggagtttat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgtaaatctattatagctgtgtcaaaggaatcaagaatttggtgagaataaggagtttat 222
Query: 300 ggg-aaaaaaaaatccacaaccaacaaaccaaccaaccaaacaagtaaacaaacactcnt 358
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 221 gggaaaaaaaaaatccacaaccaacaaaccaaccaaccaaacaagcaaacaaacactc-t 163
Query: 359 gtaggaagtcagaccaccccttcaggaaggtagttttgaagtaag 403
||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 162 gtaggaagtcagaaaagtccttcaggaaggtagttttgaagtaag 118
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 809
Length adjustment: 9
Effective length of query: 394
Effective length of database: 800
Effective search space: 315200
Effective search space used: 315200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_d04.g1 MSMg01no143_d04.g1 CHROMAT_FILE:
MSMg01no143_d04.g1 PHD_FILE: MSMg01no143_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:41 2005
(623 letters)
>mm_chr8_50266429_50267451
Length = 1023
Score = 1170 bits (605), Expect = 0.0
Identities = 617/621 (99%)
Strand = Plus / Plus
Query: 1 tttacatgcattattccattccagttatttacaaagaaggggacatgggcttaaaaaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttacatgcattattccattccagttatttacaaagaaggggacatgggcttaaaaaggc 260
Query: 61 attgcctgaacgtaactgcagctatgtgtttcttccactgggaaagtcccagtgcatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgcctgaacgtaactgcagctatgtgtttcttccactgggaaagtcccagtgcatttg 320
Query: 121 gtacttagggcaaatcttaatgtggctttcatattcctgggagagaaatgagaggagact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtacttagggcaaatcttaatgtggctttcatattcctgggagagaaatgagaggagact 380
Query: 181 aagctgtttttgcaaaaactggataggcaaagtgtcaggatgagaaactttcctgggata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagctgtttttgcaaaaactggataggcaaagtgtcaggatgagaaactttcctgggata 440
Query: 241 atttcatgtcaacataaatgtcatcaatgagaattggagaaaggaaaccagatgtgagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttcatgtcaacataaatgtcatcaatgagaattggagaaaggaaaccagatgtgagag 500
Query: 301 gatgtaaaaatggaaacttctgactccatattgcttcagaattcagcccgactgcatcac 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgtaaaaatggaaacttctgactccatattgcttcagaattcagcccgactgcatcac 560
Query: 361 cacattggagctttctcctcaagggtctgctgcaaatggctcacatgtgcagtggaaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacattggagctttctcctcaagggtctgctgcaaatggctcacatgtgcagtggaaaaa 620
Query: 421 aagtcatctcttagcttcaggaagagagaagctaggctatcaagaggcatgcacactcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtcatctcttagcttcaggaagagagaagctaggctatcaagaggcatgcacactcat 680
Query: 481 acatgcatgcacatacacatattcgcacaaagtcatactcatacacatacacataaacac 540
||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 681 acatgcatgcacacacacatattcgcacaaactcatactcacacacatacacataaacac 740
Query: 541 acagccatacacatatatgcacatatgcaaacacatacacacaggcacactcgtacacac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acagccatacacatatatgcacatatgcaaacacatacacacaggcacactcgtacacac 800
Query: 601 acacacacacacacacacaca 621
|||||||||||||||||||||
Sbjct: 801 acacacacacacacacacaca 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
