Query= MSMg01no143_m23.b1 MSMg01no143_m23.b1 CHROMAT_FILE:
MSMg01no143_m23.b1 PHD_FILE: MSMg01no143_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:27 2005
(421 letters)
>mm_chr8_119729206_119730026
Length = 821
Score = 772 bits (399), Expect = 0.0
Identities = 414/419 (98%)
Strand = Plus / Plus
Query: 3 gaattccttagttattcggatttatttcgtaagatattttgttttccatttagattatgg 62
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccttagttagtgggatttatttcgtaagatattttgttttccatttagattatgg 262
Query: 63 ccccttggtgtgaaatgaggagcttggcacactcggttatatcatagtgtgcaatatcaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccccttggtgtgaaatgaggagcttggcacactcggttatatcatagtgtgcaatatcaa 322
Query: 123 gtttctagtcggcttgatagagatttcctcatttctgttttctttagatttctttctctt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtttctagtcggcttgatagagatttcctcatttctgttttctttagatttctttctctt 382
Query: 183 agagatgagtgtaagaggcaacattgtatcgtagtgactgctaactgtgtacatgcatcc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agagatgagtgtaagaggcaacattgtatcgtagtgactgctaactgtgtacatgcatcc 442
Query: 243 tctggtcatgttggagaacaggaatctcttctctaaacttcctccctgcgtgagatgttt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tctggtcatgttggagaacaggaatctcttctctaaacttcctccctgcgtgagatgttt 502
Query: 303 atatgcaattaaagtgcgtgtaagacagcaatcctattttcctaaaagggtggcctctct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atatgcaattaaagtgcgtgtaagacagcaatcctattttcctaaaagggtggcctctct 562
Query: 363 gcaggattcccccatacctgctgggagtcaacactaagacattgctaaaaagggggtgg 421
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gcaggatttccttatacctgctgggagtcaacactaagacattgctaaaaagggggtgg 621
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_m23.g1 MSMg01no143_m23.g1 CHROMAT_FILE:
MSMg01no143_m23.g1 PHD_FILE: MSMg01no143_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:27 2005
(610 letters)
>mm_chr8_119892312_119893321
Length = 1010
Score = 967 bits (500), Expect = 0.0
Identities = 509/514 (99%), Gaps = 5/514 (0%)
Strand = Plus / Minus
Query: 99 cataggtggtgccatcccctgagcaggtggtcctgggatatgtaagaaagcaggctgagg 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 cataggtggtgccatcccctgagcaggtggtcctgggatatgtaagaaagcaggctgagg 951
Query: 159 gctagtgagatggctcagtgggtaagagcacccaactgctcttccgaaggtcaggagttc 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 gctagtgagatggctcagtgggtaagagcacccaactgctcttccgaaggtcaggagttc 891
Query: 219 aaatcccagcaaccacagttgtaatgta--ttttctcaggaggagacaagagaatcagaa 276
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 890 aaatcccagcaaccacagttgtaatgtagc---tctcaggaggagacaagagaatcagaa 834
Query: 277 gttcgaggtccgcctaggcgacaatgagatgttgcctacaagaaacgaaatagtgtgggt 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 gttcgaggtccgcctaggcgacaatgagatgttgcctacaagaaacgaaatagtgtgggt 774
Query: 337 gcttcctcttctgccacctggacagcagccctggggggttgtcagctctcacagctcacc 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gcttcctcttctgccacctggacagcagccctggggggttgtcagctctcacagctcacc 714
Query: 397 agcaccaccagtcccttctcaagtctcaagggcctccctctgtctgaccctggtggcctt 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 agcaccaccagtcccttctcaagtctcaagggcctccctctgtctgaccctggtggcctt 654
Query: 457 ctgtctcacaggaccttcgctctacaaagctgggttctccggaagccaaggccagcaggg 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ctgtctcacaggaccttcgctctacaaagctgggttctccggaagccaaggccagcaggg 594
Query: 517 cagactcttagacaaataaactcaatacggttcttggcaaggccgagctggattcaggag 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cagactcttagacaaataaactcaatacggttcttggcaaggccgagctggattcaggag 534
Query: 577 cccgtgtgtgtttccatgcatgggaagtccctgg 610
||||||||||||||||||||||||||||||||||
Sbjct: 533 cccgtgtgtgtttccatgcatgggaagtccctgg 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
