BAC Information

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BAC

Clone NameMSMg01-144A24
Chromosome8 (Build37)
Map Location 14,497,702 - 14,498,034
singlet/doubletsinglet
Overlap geneDlgap2
Upstream geneLOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, LOC100041140
Downstream geneC030037F17Rik, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144A24.T7 (MSMg01no144_a24.b1)MSMg01-144A24.TJ (MSMg01no144_a24.g1)
ACCAG348233AG348234
length788773
length of high quality
(start - end)
281 (46 - 326)339 (80 - 418)
definitionCHROMAT_FILE: MSMg01no144_a24.b1 PHD_FILE: MSMg01no144_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:47 2005CHROMAT_FILE: MSMg01no144_a24.g1 PHD_FILE: MSMg01no144_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACGCCTAGTCACCGCCCATCTCGGGGCGTGGTAATGGGGTGATGG
GGGAGCAACTAATCAGGTGCTGTCATGCCACATCAGGTGCTGAAATGTCA
CGCTGAGGGCTATATAAGCAGCGCCATTTTCTGGGTTCGGGGTCTTCCTG
AGAAGTAAGCAATAAAAGCTTTGCCGTAGAAGGATCCGGTGAATTCTTGC
CAGCTAGATACTAGCTCAGGCGAGAGTTAGGAAATAAAGCTCTGCACTGT
TAATGTACTGATCACCCCACAGAGCCGTTTGCATAGGCTCCTGGATACAC
GAGAGGAGGCAGCTGCTCTCCGGCACCACCTGGAGGTGGTGTTCTATACT
GAACGCCTAGTCTTTTCCCCCCCCCCCATTCTTCCTCAAAGTCCCGATTC
TCCTAGCCTCCTGACGCCTATGAGCTCTGCCACCTTTATTTGCTCCTTCT
CGCTCCTCGTTCTACACCTCTTCCCCCTCTTCTTATCCCCCCCCCTACCT
CGTCTTACCCCCCTGATTTCCCCCTACTCCTCTTCATACCATTCTCCCCT
TTTCCCTTTTACCTTCCGCCTTCTATTCTTACCGATCCTTTTCCTCTTCT
TTCTTCCCCCCTTTTCCCTTTCCCCTCCTTTCCCCCCCTTTTTTTCTCTA
CCTTCCTTTCTTATTTCCCCTTTTTTTCTCCTTTTTTATCCACCCCTTTC
TCGTTTTCTTCCTCCCTCCCTTTCGCGTCTTTTTCTCC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTAGGACAGTGAGGAAGGAA
ATTACTGTTTATTGAACAAGGCAGGACCTAGCATTCTGTCACAGCCTAGG
GGACTAGCATGCTTGGGGTTTTGTGAGTTGTCTGCTAAGTTAACAAGTTG
ACTCACAGTAGCCCACAGATGCTTTGGGCTGGGTGTGGTTAACAGTGAGG
ACATGGATGCGATTACACAAGAAGCTTGTGACCTTAGGTCAGGGTGACTG
ACAGGAACAAGAAGGGGCTGAAAATGGGTTTGTGTCAGGCAGCCATCCAG
GGCTGCCTGTAGTCAAGAGTTCCCATGAAAAGCACGGGCGCCCTACTCTA
GGTGTGTTCCCACTGACATACCCTGAGATGTCCCAGACTCCAGGACTCAA
CGCACTTCCAGGTATCTTTTCGTGGAACTGAACAATTTTAAAATGTTTCC
ATGCAATATATAAAAAAATTAACGTTTGTAATGGTCCAGCCCCAGCAAGC
TGTACAGAAGGGCTCCATGGGTTCTGTTCCACCTTGGGGAGGAAGGTTTT
GACCTCCTTCACCGCCTTTTCCTGTTTGTATCAGATTACACCCCCTCACC
GCCTTCGACTGCCCCTTCCCCCTTTTTTCCATTTTTTCCCCTCTTTCCTC
GCCTCCCTTGCTCTCACCTTCATGGTNTCCACCCCATTACTTTCCTCTTC
TTTTTTTCCCCCCCTCTTCCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_a24.g1 MSMg01no144_a24.g1 CHROMAT_FILE:
MSMg01no144_a24.g1 PHD_FILE: MSMg01no144_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:47 2005
         (339 letters)



>mm_chr8_14497502_14498236
          Length = 735

 Score =  601 bits (311), Expect = e-176
 Identities = 329/337 (97%), Gaps = 4/337 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctaggacagtgaggaaggaaattactgtttattgaacaaggcaggacctagcattctgt 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 533 cctaggacagtgaggaaggaaattactgtttattgaacaagacaggacctagcattctgt 474

                                                                       
Query: 61  cacagcctaggggactagcatgcttggggttttgtgagttgtctgctaagttaacaagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cacagcctaggggactagcatgcttggggttttgtgagttgtctgctaagttaacaagtt 414

                                                                       
Query: 121 gactcacagtagcccacagatgctttgggctgggtgtggttaacagtgaggacatggatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gactcacagtagcccacagatgctttgggctgggtgtggttaacagtgaggacatggatg 354

                                                                       
Query: 181 cgattacacaagaagcttgtgaccttaggtcagggtgactgacaggaacaagaaggggct 240
            |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 353 tgattacacaagaagcttgtgtccttaggtcaaggtgactgacaggaacaagaaggggct 294

                                                                       
Query: 241 gaaaatgggtttgtgtcaggcagccatccagggctgcctgtagtcaagagttcccatgaa 300
           |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||
Sbjct: 293 gaaaatgggtttgtgtcaggcagccatccaggg----ctgtagtcaagagttcccatgaa 238

                                                
Query: 301 aagcacgggcgccctactctaggtgtgttcccactga 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 aagcacgggcgccctactctaggtgtgttcccactga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 735
Length adjustment: 9
Effective length of query: 330
Effective length of database: 726
Effective search space:   239580
Effective search space used:   239580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)