BAC Information

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BAC

Clone NameMSMg01-144G07
Chromosome8 (Build37)
Map Location 111,530,729 - 111,600,798
singlet/doubletdoublet
Overlap genenone
Upstream geneAtbf1
Downstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144G07.T7 (MSMg01no144_g07.b1)MSMg01-144G07.TJ (MSMg01no144_g07.g1)
ACCAG348475AG348476
length787729
length of high quality
(start - end)
330 (46 - 375)325 (78 - 402)
definitionCHROMAT_FILE: MSMg01no144_g07.b1 PHD_FILE: MSMg01no144_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:13 2005CHROMAT_FILE: MSMg01no144_g07.g1 PHD_FILE: MSMg01no144_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,600,479 - 111,600,798)(111,530,729 - 111,531,043)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAATCGAGCCATTTTCTAAAAGTAGATAGACCATGTTCATGGAT
AATAAAACTGAATAAGGAAGGGTGTTCATTCTTTCTAAATTAATCTGCAA
TTCTAATTAAAGTCTCTGAAGGATTTCTCAAGAGCTGATCATTTTTTTAA
AATCATATGGAAGATACTTGGTATGGAGGCTAGGAGAGCAGTTAACCCTA
CTGACTACTCTTTTAGAATTACAGTGATTTAAGACCTGTTTATACATGCT
CAGGAATCGACAGCGAGAAACTAGAAAGCTTAAAAACAGAGGCACATACA
TTAAAACTATATGGGGGGGGGGTGTTCACCCTTTTCATTCTCCTTCCTTT
TCCTTATCTTTTTTCTTTCCCCCCCCCCCCTCTTTCTTTTCCCCTCCCCT
CCTTTTTTTTTTTTTTTTATTTTTTTCTTCCTTTTTTTTCCCCCTTTTCT
TCTTTTTTACCTTCCTCCCTTCCTTCTTTATCCTCTATCCTTCCCCTTCC
CTTTTTTTTTTTTTCTTTTTTTCTTCTCTTTCCCTTTTTTCCTCTTTCTT
CATCTCTTCTCCTCCTTTTTTTCCCTTCTTTCTCTCTTCTTTATTCCCAC
TCTCCCCTTTTCCTCTCCTTATTCCTTCAATTTTTTCCTTTCCCCACTCC
CATCGTTCTTTTTTCTCTTATTTCCACCTTTTTTGCCATACCTTTCTAAC
ACTTTCTCCTTATTTTACGTCTTTTCTCACTCCCCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTCTGAGTTTCAAAAGAAAA
GTCTGGGCTGCACTTGTTTCTCCGCACCGCTGTGCAGAGAAGTAGTTTAG
AAGTCTATGCCTCATAGATGTCTGTGCCAAACCACCATCTAATACTGATG
AGTTTATAGGGAGCACCTGCTATTACGAGACCAGGAACTAGAACCTGGCA
TCGGAGGATCGTGGTAGAAGCAAGGTGCACGCCAGCAGGTCATATTTACA
GTTACAATATTTGGGGCTACCGCAGCCAGAGAATCACGGGGCGAGAAAGG
AAGGGCAGTGCTGCCTTTTTCCTTTGTCTGGAAAAACAAGCACGTGCGCG
CTCCATGTGAAAACAACCCACCCCCTGATCTTTGCCTTACTTACAGTTAG
AGGGTGTGCCACCCTCCTGGCCAGCCAGGCTGTGTTCACGTTCTGTAGAG
AAGAGCTGGCCGCTGCCCATCCCAAAGGAAGAGCCTTTCTATTGCCTGAA
GGTAATTAATGTTCAATCTGATTTACTCATCTCCAAACCAAGAACAGGTC
TAAAAGAACATTAGAGCACAGGCATTATTGATTCCCCAGTTAACACTCTA
AACACTTAGGGTTGAGGGGATATGTGGTGTTGTTAATGATACATCTTCTC
CTCCTCTCCTTTTTTTTTCCTCCCTCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_g07.b1 MSMg01no144_g07.b1 CHROMAT_FILE:
MSMg01no144_g07.b1 PHD_FILE: MSMg01no144_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:13 2005
         (330 letters)



>mm_chr8_111600146_111600875
          Length = 730

 Score =  572 bits (296), Expect = e-168
 Identities = 314/320 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacaatcgagccattttctaaaagtagatagaccatgttcatggataataaaac 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ggaattcacaatcgaggcattttctaaaagtagatagaccatgttcatggataataaaac 594

                                                                       
Query: 64  tgaataaggaagggtgttcattctttctaaattaatctgcaattctaattaaagtctctg 123
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgaataaggaagggtgctcattctttctaaattaatctgcaattctaattaaagtctctg 534

                                                                       
Query: 124 aaggatttctcaagagctgatcatttttttaaaatcatatggaagatacttggtatggag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aaggatttctcaagagctgatcatttttttaaaatcatatggaagatacttggtatggag 474

                                                                       
Query: 184 gctaggagagcagttaaccctactgactactcttttagaattacagtgatttaagacctg 243
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 473 gctaggagagcagttaaccctactgactactcttttagagttacagtgatttaagacctg 414

                                                                       
Query: 244 tttatacatgctcaggaatcgacagcgagaaactagaaagcttaaaaacagaggcacata 303
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 413 tttatacatgctcaggaatcgacagtgagaaactagaaagcttaaaaacagaggcacata 354

                               
Query: 304 cattaaaactatatgggggg 323
           ||| ||||||| ||||||||
Sbjct: 353 cataaaaactagatgggggg 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no144_g07.g1 MSMg01no144_g07.g1 CHROMAT_FILE:
MSMg01no144_g07.g1 PHD_FILE: MSMg01no144_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:13 2005
         (325 letters)



>mm_chr8_111530529_111531253
          Length = 725

 Score =  563 bits (291), Expect = e-165
 Identities = 309/315 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcctctgagtttcaaaagaaaagtctgggctgcacttgtttctccgcaccgctgtgcag 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ctcctctgcgtttcaaaagaaaagtctgggctgcacttgtttctccgcaccgctgcgcag 260

                                                                       
Query: 61  agaagtagtttagaagtctatgcctcatagatgtctgtgccaaaccaccatctaatactg 120
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 261 agaagtagtttagaagtctatgcttcgtagatgtctgtgccaaaccaccatctaatactg 320

                                                                       
Query: 121 atgagtttatagggagcacctgctattacgagaccaggaactagaacctggcatcggagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgagtttatagggagcacctgctattacgagaccaggaactagaacctggcatcggagg 380

                                                                       
Query: 181 atcgtggtagaagcaaggtgcacgccagcaggtcatatttacagttacaatatttggggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcgtggtagaagcaaggtgcacgccagcaggtcatatttacagttacaatatttggggc 440

                                                                       
Query: 241 taccgcagccagagaatcacggggcgagaaaggaagggcagtgctgcctttttcctttgt 300
           ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 taccgcagccagaaaatcacggggcaagaaaggaagggcagtgctgcctttttcctttgt 500

                          
Query: 301 ctggaaaaacaagca 315
           |||||||||||||||
Sbjct: 501 ctggaaaaacaagca 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)