BAC Information

Click to search

BAC

Clone NameMSMg01-144G10
Chromosome8 (Build37)
Map Location 69,665,667 - 69,665,935
singlet/doubletsinglet
Overlap genenone
Upstream geneMarch1, 1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440, LOC665453
Downstream geneNat1, Nat2, LOC100041265, Nat3, Psd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144G10.T7 (MSMg01no144_g10.b1)MSMg01-144G10.TJ (MSMg01no144_g10.g1)
ACCAG348481AG348482
length710710
length of high quality
(start - end)
270 (143 - 412)367 (75 - 441)
definitionCHROMAT_FILE: MSMg01no144_g10.b1 PHD_FILE: MSMg01no144_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:13 2005CHROMAT_FILE: MSMg01no144_g10.g1 PHD_FILE: MSMg01no144_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGA
ATTCAGCTGAACCCCATCTCAATACCTAAGAATGCAATAAGTTAGTTGAT
CTCAAGACTTCCTGTTTCTAACAATTTCCAGGGAAAATGCAAGAAAGATT
GGCAACTTTTAAAGTAGAAGAGCGTGTGGAAATTTCAAAGAATATTTTGT
TCAGATAGAAACAGATATTCTCACATAAAATGTCAGAATGAAGTGTTTAG
TTTCTAGATTGAAAGCTATTATATCAATCACATGTTGGTGTTCATGACTT
CATGATTGTGACCAAATGCAACAAGAAATTTTGGTTGTCAACTCTATATA
ATCATGGCTTTTGAGTCCTGCAGAACATTCTAACAGTTTGAAAATTGAAA
ATATAAAGTGACCCCCCCAGACATGAGAATAACCTCTAATACGTTAGCAC
ATAAGAGTTTAAACAAGCAATGGAATTTCCTTTAAGAGAAATTGGTGTGT
GGTTGATGTTTTCTTCTTATATTTATAATCTGCAAAGTAGTATTTAGCGA
TAACTCGTGGAATGCATTCAAGCATTTAATTTTCTGACAAAAAAATATAG
AACTTCGCGTATTTCTACCTACTGGACCGATATGATAATTACAAGTCTCA
TACCCCAGAATTCGATCCTAATACACCATACGCCAGATCTGCCCTTTTGA
CTGATTCTGG
CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCTTCTATTCCTTTTAGTCTTAGAT
TTGGTCTTTTTGTAGTGTCTCAGAACTCCTGGATTTGGTGTCTGAGACTC
TTTCTTCCATCTTTTGAATTTTGTTGGTGAAGCTTGACTCTATTATTTCT
CTGTGAATGTCTACATGTTTCATATTTCAAATTTCAGTTTCAAGATTTCT
CTCGGTTTGTGTTTTCTTTATTGATTAGATTTTTATTTTCAAGTCTTCAA
CTATTTAATTCATAGGTTTCTTTAAGGAATACACATGCTTCCCCTTGAAG
CATCTCTATCGTATTCCTAAAGACCATTTTAAGGCATTTTTCTTGTACTT
TAGGCATATTGCCCCCCCCAGGGCCTGCTGTGCTTCTGGCGGAGACATTG
TCTTGGCGGCTACTAGTTTTTATGCTGTCATCTGAGATTGGGAAAACTGT
ACTTCTAGGTGTAAAACTGTAATTCTTTATCACTGTACCTCTGGGCGTTG
ATAGTTTGTCCTTGCCCTTGCCGCATGTGCGTTTTATTCATGGCTCTTGT
CGCTCTGTTCCGTTCTTATGATTATGTACCCCTTTGCGCCTCGTTTCGTC
CTGAATATTTTCCCTCTGGTACTCCTCGCATTATTTTTCCCTGTTTTCCC
ACCTTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_g10.b1 MSMg01no144_g10.b1 CHROMAT_FILE:
MSMg01no144_g10.b1 PHD_FILE: MSMg01no144_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:13 2005
         (270 letters)



>mm_chr8_69665467_69666136
          Length = 670

 Score =  497 bits (257), Expect = e-145
 Identities = 266/269 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaagattggcaacttttaaagtagaagagcgtgtggaaatttcaaagaatattttgttc 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 gaaagattggcaacttttaaagtagaagagcatgtggaaatttcaaagaatattttgttc 260

                                                                       
Query: 61  agatagaaacagatattctcacataaaatgtcagaatgaagtgtttagtttctagattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatagaaacagatattctcacataaaatgtcagaatgaagtgtttagtttctagattga 320

                                                                       
Query: 121 aagctattatatcaatcacatgttggtgttcatgacttcatgattgtgaccaaatgcaac 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 aagctattatatcaatcacatgttggtgtttatgacttcatgattgtgaccaaatgcaac 380

                                                                       
Query: 181 aagaaattttggttgtcaactctatataatcatggcttttgagtcctgcagaacattcta 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 aagaaattttggttgtcaactctatataatcatggcttttgagtcctgtagaacattcta 440

                                        
Query: 241 acagtttgaaaattgaaaatataaagtga 269
           |||||||||||||||||||||||||||||
Sbjct: 441 acagtttgaaaattgaaaatataaagtga 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)