BAC Information

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BAC

Clone NameMSMg01-144N22
Chromosome8 (Build37)
Map Location 17,511,090 - 17,511,597
singlet/doubletsinglet
Overlap geneCsmd1
Upstream genenone
Downstream geneLOC665638, LOC100040466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144N22.T7 (MSMg01no144_n22.b1)MSMg01-144N22.TJ (MSMg01no144_n22.g1)
ACCAG348820AG348821
length752734
length of high quality
(start - end)
294 (69 - 362)509 (72 - 580)
definitionCHROMAT_FILE: MSMg01no144_n22.b1 PHD_FILE: MSMg01no144_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:48 2005CHROMAT_FILE: MSMg01no144_n22.g1 PHD_FILE: MSMg01no144_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGATACGCGGAATT
CAGCATTTTCTCTCGGATCTTTCTACTTGTTACACTTCTTACATTCTGTG
GATTGTACCCTAGGTATTCTGTACTTTTTGGCTAATAGTCACTAATCAGT
TAGTACATACCATGTATGTCCTTTTGGGTCTGAGTTACTTCACTGAGGAT
GATATTTTCTAGTTCCATACATTTGTCTGCAAAATTCATGATGTCCTCAT
TTTTAATAGCTGAATTGTATTCCATTGTGTAAATAAACCACATTTTCTGT
ATCCATTCTTTGGTTGAGGGACATCTGGGTTGTTTCCATCTTCTGGCTAT
TATAAATAAGGCTGCTATGAACACGGTGGAGCATGTGTCCTTGTGGTAAG
GTGGAGTGTTCCCCCCCCCTTTTCTTATTATCGTTCTTTTTGTCCCTTTC
TCCGCTTATATTTCCTTCCCTCCCATTAATCTCTCCATTCCTCCTACTCC
CCCTTCCTTTTCTCTCCTTTTTTCTCTCTCTTCTTTCTTCCCTTTCCCTT
TTTCTCCTTTTCTTTTCATCCTTCTTCCTTTTTTACCCTTTTTTTTTCCT
TTTCCTCCTCTTCCCCTTCACTTCTTTCCCTTCTTCTTTCTCCCCTTTTC
CTTTTCCCTCTCCCTCCTTTTCACTTCTAATCCATCCCTTCTTTTCCTCT
TTCTCCCTATTCCCTTTTTTCCTTCCCATCTTCTCCCCCTTATTCACACC
TT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAAAGGACCTGCTGGAATGCAGACCAAGT
CAGCCAGTGAAACTCATGGCTGTGCTCACTCTAACACTGCAGTAGGAGGC
AACCCACAGCTCTCCCAAGTGTAGACCCCCAAGCAGCAGGCTCTTATGTC
CATCCATAAGAAACCCAAGACCAACACCTAACAGATTTACTCACTGCAAG
ACCAAAGGATCAGTGAGCAGCAGATGTACCATGAGCTGTGCAGTTCCTAA
GTGATGCCATGCAAATTATCCTTCTAATAATTTTTTTGTTTGAAAAAAAT
TAAAAAGAAATATGAAATTGGATTTAACATGCGCCTCAATTAAAAATAAT
TCTGATCTACTTCAACTGCACAAACCTGAGGAATTTATGGTATGCTGTCA
ACACAGCCTTCAAATAACTGAGGATGGTTGTGTAAGCACATCCTTTCCTT
TTTCACAAGCTCCGTTTAAAAATACCAGCCAGAGTGACTGAAGCATTGGC
AATCTACCGTTGAAAATTCCATAGAGAATTTTTTGCCTTTTACAAATTGC
CATTTTGCTTTATGCCATTTTGAACCTCTGATGTTACTGCGTGGAAAGAA
ATTGACCAGACATCTGGAGTTCTCCAGAGGGCAAGAGCGAACTCAATTAG
CCATTGATTGGAAATGTTTGAGCAGATAAACTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_n22.g1 MSMg01no144_n22.g1 CHROMAT_FILE:
MSMg01no144_n22.g1 PHD_FILE: MSMg01no144_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:48 2005
         (509 letters)



>mm_chr8_17510890_17511797
          Length = 908

 Score =  953 bits (493), Expect = 0.0
 Identities = 505/509 (99%), Gaps = 1/509 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaggacctgctggaatgcagaccaagtcagccagtgaaactcatggctgtgctcactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaggacctgctggaatgcagaccaagtcagccagtgaaactcatggctgtgctcactc 260

                                                                       
Query: 61  taacactgcagtaggaggcaacccacagctctcccaagtgtagacccccaagcagcaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacactgcagtaggaggcaacccacagctctcccaagtgtagacccccaagcagcaggc 320

                                                                       
Query: 121 tcttatgtccatccataagaaacccaagaccaacacctaacagatttactcactgcaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttatgtccatccataagaaacccaagaccaacacctaacagatttactcactgcaaga 380

                                                                       
Query: 181 ccaaaggatcagtgagcagcagatgtaccatgagctgtgcagttcctaagtgatgccatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaaaggatcagtgagcagcagatgtaccatgagctgtgcagttcctaagtgatgccatg 440

                                                                       
Query: 241 caaattatccttctaataatttttttgtttgaaaaaaattaaaaagaaatatgaaattgg 300
           |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 caaattatccttctaatattttttttgtttgaaaaaa-ttaaaaagaaatatgaaattgg 499

                                                                       
Query: 301 atttaacatgcgcctcaattaaaaataattctgatctacttcaactgcacaaacctgagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 500 atttaacatgcgcctcaattaaaaataattctgatctacttcaactgtaaaaacctgagg 559

                                                                       
Query: 361 aatttatggtatgctgtcaacacagccttcaaataactgaggatggttgtgtaagcacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aatttatggtatgctgtcaacacagccttcaaataactgaggatggttgtgtaagcacat 619

                                                                       
Query: 421 cctttcctttttcacaagctccgtttaaaaataccagccagagtgactgaagcattggca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cctttcctttttcacaagctccgtttaaaaataccagccagagtgactgaagcattggca 679

                                        
Query: 481 atctaccgttgaaaattccatagagaatt 509
           |||||||||||||||||||||||||||||
Sbjct: 680 atctaccgttgaaaattccatagagaatt 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 908
Length adjustment: 10
Effective length of query: 499
Effective length of database: 898
Effective search space:   448102
Effective search space used:   448102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)