Query= MSMg01no145_h20.b1 MSMg01no145_h20.b1 CHROMAT_FILE:
MSMg01no145_h20.b1 PHD_FILE: MSMg01no145_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:35 2005
(534 letters)
>mm_chr8_69000079_69001012
Length = 934
Score = 909 bits (470), Expect = 0.0
Identities = 514/538 (95%), Gaps = 16/538 (2%)
Strand = Plus / Plus
Query: 1 aaatctattttaaaactgcaaatacttatttgagtgagttcaatagcaaattcttaca-- 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aaatctattttaaaactgcaaatacttatttgagtgagttcaatagcaaattcttacata 268
Query: 59 --gataattactaaaataaattttatttgtgtgcatgcatatgcacacttcccatggtgt 116
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 269 cagataattactaaaataaattttatttgtgtgcatgcatacacacacttcccattgtgt 328
Query: 117 gcaggtggacattcaaagaaatttgtagcatcctttctctttaacccatggattctctga 176
||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gcaggtg------------aatttgtagcatcctttctctttaacccatggattctctga 376
Query: 177 ctcaagcttcagtagtcaggcttggctgcaagtcccctcctgctaagccatgtcaccagc 236
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 377 ctcaagcttcagtagtcaggcttggctgcaagccccctcctgctaagccatgtcaccagc 436
Query: 237 ccacaaataaatgacaatgtgccatggtcactgagtagaacatgaaggtctcaggtattt 296
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ccacatataaatgactatgtgccatggtcactgagtagaacatgaaggtctcaggtattt 496
Query: 297 caatgagggctgacaggcactggagtcatttcttcatccgtgtcacttgattcacccgct 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 497 caatgagggctgacaggcactggagtcatttcttcatccgtgtcacttgattcacttgct 556
Query: 357 ggttccagtttcccatctgtagtggctccagttggccctgatagttctaattctcctaaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggttccagtttcccatctgtagtggctccagttggccctgatagttctaattctcctaaa 616
Query: 417 tccttttctatatttaaaatatttttctgtttgcgcttcttaggaactgcatcatcagca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tccttttctatatttaaaatatttttctgtttgcgcttcttaggaactgcatcatcagca 676
Query: 477 caaagtttcctcattttgatgtttggcaatttcttcagatcaaaatcccattccctag 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 caaagtttcctcattttgatgtttggcaatttcttcagatcaaaatcccattccctag 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_h20.g1 MSMg01no145_h20.g1 CHROMAT_FILE:
MSMg01no145_h20.g1 PHD_FILE: MSMg01no145_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:35 2005
(596 letters)
>mm_chr8_69136347_69137342
Length = 996
Score = 1042 bits (539), Expect = 0.0
Identities = 572/583 (98%), Gaps = 1/583 (0%)
Strand = Plus / Minus
Query: 14 aaaacactatgtgagggggaaacccactaataatcaccagttttaaagttgttttttttt 73
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 996 aaaacactatgtgagggggaaacccactaataatcaccagttttaaagttg-tttttttt 938
Query: 74 aaatgtcagtgtattaagtgaacatttgtttttactatttttaatttccttatacatata 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 aaatgtcagtgtattaagtgaacatttgtttttactatttttaatttccttatacatata 878
Query: 134 taactaatagagaaatacctatctttttgacaacaaaacttagtgattacagaatattgt 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 taactaatagagaaatacctatctttttgacaacaaaacttagtgattacagaatattgt 818
Query: 194 attcttcttcattaattattattttttattttctgaactgctcagtatcaaacccagtac 253
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 817 attcttcttcattaattatcattttttattttctgaactgctcagtatcaaacccaggac 758
Query: 254 ggtgtgtacacaaaaactctagtccagagttattcttccagcccacccatcacaaattct 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ggtgtgtacacaaaaactctagtccagagttattcttccagcccacccatcacaaattct 698
Query: 314 ttgcatggttatcactgcacgctagcatacccccacaccatcatcagagcagaaaaccca 373
||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 697 ttgcatggttatcactgcacgttagcatagttctacaccatcatcagagcagaaaaccca 638
Query: 374 cagatttatatatttcacttccttctgcatgagagcgtgggtacaggtgctgcttaagta 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 637 cagatttatatatttcacttccttctgcatgagagcgtgggtacaggtgctgcttaatta 578
Query: 434 ttgatgatcagacacaaagctcttattccagtgtgacagctgtgcagtcatggtgctcct 493
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttgatgatcagactcaaagctcttattccagtgtgacagctgtgcagtcatggtgctcct 518
Query: 494 tgcttctcctgcaaagaggggttacatcgtataatcttgtcctttagttggcatgacaaa 553
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 517 tgcttctcctgcaaagaggggttacattgtataatcttgtcctttagttggcatgacaaa 458
Query: 554 atgactgaaccatagaagactcataacatgccattttctaagt 596
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atgactgaaccatagaagactcataacatgccattttctaagt 415
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
