BAC Information

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BAC

Clone NameMSMg01-145K14
Chromosome8 (Build37)
Map Location 42,648,326 - 42,648,803
singlet/doubletsinglet
Overlap genenone
Upstream geneMtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1, Pcm1, Asah1, Frg1
Downstream geneLOC100039376, Gm1815, LOC671994, Zfp353, EG620772, LOC628212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145K14.T7 (MSMg01no145_k14.b1)MSMg01-145K14.TJ (MSMg01no145_k14.g1)
ACCAG349406AG349407
length714712
length of high quality
(start - end)
478 (76 - 553)543 (74 - 616)
definitionCHROMAT_FILE: MSMg01no145_k14.b1 PHD_FILE: MSMg01no145_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:49 2005CHROMAT_FILE: MSMg01no145_k14.g1 PHD_FILE: MSMg01no145_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCG
GAATTCATTGCCATCTCTCAGAAAATTCAAGAAAGGTGTCCAGGGAGAAA
GAATATGATATCAGACAGAAATGGAATTACAAGAAACCTAGAAGACTGTT
AAAATAGAATTAATGAACGCTGGAGTCATGAGAGACCAACACCTGCCCAG
TTATCTCTCAAGCTGGCTTGTCCTTTTGGATACTAGATAGGCAGGTCCCT
GAGTGGCCTGAGGGAAGAGGAGAAGGACCATGACAAATCCAGAGAACCAA
GAGACTATGAACTCATGAAGTGTATCACCGGACAGCTCCAAATGCCTTCC
ACTGTTATTACAGTGTATGTTCAGAGGCGAAGCAAATTAAGTCTGGCGTA
CTGAAGAAGGTATCTGCCCCCAGGGCTGGAAACCCAGACTCTGCCTACAG
ACTCAAGCTGACATTGCAACAAATAGAACAGGAGGGAATAAATTCTACAG
GCAGAGCAGCTCTTTGAAAGAGCCTTAGCTGCTTCATAGAAATAAGAAAT
GGACTTCAGAAGAGGAAGTGTTTCATTTGGGGAGTGTATGTGGGTGGTTG
CAAACTTGAGTGGCTTTATTTGCCCATTTGAGCTCTGTACCCTTTGGAAT
TATGCCGATGTGTTCTGAATCTTACCACGCTATTTATATTTCCCTACCCT
GTTTACTATTTTGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAG
GTGGGAGTGCAGGCTTGCACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGACATTCCTACC
CAAATGGATGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_k14.b1 MSMg01no145_k14.b1 CHROMAT_FILE:
MSMg01no145_k14.b1 PHD_FILE: MSMg01no145_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:49 2005
         (478 letters)



>mm_chr8_42648126_42649003
          Length = 878

 Score =  886 bits (458), Expect = 0.0
 Identities = 473/478 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcaagaaaggtgtccagggagaaagaatatgatatcagacagaaatggaattacaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttcaagaaaggtgtccagggagaaagaatatgatatcagacagaaatggaattacaagaa 619

                                                                       
Query: 61  acctagaagactgttaaaatagaattaatgaacgctggagtcatgagagaccaacacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 acctagaagactgttaaaatagaattaatgaacgctggagtcatgagagaccaacacctg 559

                                                                       
Query: 121 cccagttatctctcaagctggcttgtccttttggatactagataggcaggtccctgagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cccagttatctctcaagctggcttgtccttttggatactagataggcaggtccctgagtg 499

                                                                       
Query: 181 gcctgagggaagaggagaaggaccatgacaaatccagagaaccaagagactatgaactca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gcctgagggaagaggagaaggaccatgacaaatccagagaaccaagagactatgaactca 439

                                                                       
Query: 241 tgaagtgtatcaccggacagctccaaatgccttccactgttattacagtgtatgttcaga 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgaagtgtagcaccggacagctccaaatgccttccactgttattacagtgtatgttcaga 379

                                                                       
Query: 301 ggcgaagcaaattaagtctggcgtactgaagaaggtatctgcccccagggctggaaaccc 360
           |||||||||||||||||||||||||||||||||||||||||  |  ||||||||||||||
Sbjct: 378 ggcgaagcaaattaagtctggcgtactgaagaaggtatctgttcaaagggctggaaaccc 319

                                                                       
Query: 361 agactctgcctacagactcaagctgacattgcaacaaatagaacaggagggaataaattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agactctgcctacagactcaagctgacattgcaacaaatagaacaggagggaataaattc 259

                                                                     
Query: 421 tacaggcagagcagctctttgaaagagccttagctgcttcatagaaataagaaatgga 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tacaggcagagcagctctttgaaagagccttagctgcttcatagaaataagaaatgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)