MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-146C22
Chromosome	8 (Build37)
Map Location	47,684,987 - 47,685,617
singlet/doublet	singlet
Overlap gene	Ccdc111
Upstream gene	Sorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip
Downstream gene	Casp3, Irf2, Enpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a
Link	Open Mouse BAC browser

Click to get alignment info.

name	Sorbs2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234214 MGI:1924574
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pdlim3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53318 MGI:1859274
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc110 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212392 MGI:2685018
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700029J07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69479 MGI:1916729
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1810047C23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192169 MGI:1913679
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ankrd37 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:654824 MGI:3603344
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lrp2bp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67620 MGI:1914870
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Snx25 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102141 MGI:2142610
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933411K20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66756 MGI:1914006
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc25a4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11739 MGI:1353495
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC621269 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:621269
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 1059 ESTs, 41 Proteins pseudo : _no_value

name	LOC100039875 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039875
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 mRNAs, 234 ESTs, 22 Proteins

name	LOC667325 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667325
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Helt (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:234219 MGI:3040955
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667337 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667337
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs

name	Acsl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14081 MGI:102797
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mlf1ip (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71876 MGI:1919126
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc111 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:408022 MGI:3603756
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Casp3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12367 MGI:107739
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Irf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16363 MGI:96591
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Enpp6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320981 MGI:2445171
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Stox2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71069 MGI:1918319
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930448N21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:384817 MGI:1926155
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 Protein

name	D030016E14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320714 MGI:2444585
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rwdd4a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192174 MGI:2681000
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sorbs2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124301205 GeneID:234214 MGI:1924574
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sorbin and SH3 domain containing 2 transcript_id : NM_172752.3

name	Pdlim3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892778 GeneID:53318 MGI:1859274
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PDZ and LIM domain 3 transcript_id : NM_016798.3

name	Ccdc110 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377416 GeneID:212392 MGI:2685018
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 110 transcript_id : NM_001033246.2

name	1700029J07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388130 GeneID:69479 MGI:1916729
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700029J07 gene transcript_id : NM_001033148.2

name	1810047C23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:20149753 GeneID:192169 MGI:1913679
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1810047C23 gene transcript_id : NM_138668.1

name	Ankrd37 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:88319965 GeneID:654824 MGI:3603344
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 37 transcript_id : NM_001039562.1

name	Lrp2bp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326493 GeneID:67620 MGI:1914870
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Lrp2 binding protein transcript_id : NM_026278.3

name	Snx25 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75832038 GeneID:102141 MGI:2142610
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sorting nexin 25 transcript_id : NM_207213.1

name	4933411K20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361488 GeneID:66756 MGI:1914006
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933411K20 gene transcript_id : NM_025747.3

name	Slc25a4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365551 GeneID:11739 MGI:1353495
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 transcript_id : NM_007450.3

name	LOC100039875 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149258743 GeneID:100039875
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 mRNAs, 234 ESTs, 22 Proteins product : similar to LOC654472 protein transcript_id : XM_001473650.1

name	Helt (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46048389 GeneID:234219 MGI:3040955
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Hey-like transcription factor (zebrafish) transcript_id : NM_173789.4

name	LOC667337 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94383451 GeneID:667337
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs product : hypothetical LOC667337 transcript_id : XM_989927.1

name	Acsl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75992918 GeneID:14081 MGI:102797
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA synthetase long-chain family member 1 transcript_id : NM_007981.3

name	Mlf1ip (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388070 GeneID:71876 MGI:1919126
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myeloid leukemia factor 1 interacting protein transcript_id : NM_027973.3

name	Ccdc111 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47564099 GeneID:408022 MGI:3603756
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 111 transcript_id : NM_001001184.1

name	Casp3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129865 GeneID:12367 MGI:107739
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : caspase 3 transcript_id : NM_009810.2

name	Irf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363638 GeneID:16363 MGI:96591
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interferon regulatory factor 2 transcript_id : NM_008391.3

name	Enpp6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368620 GeneID:320981 MGI:2445171
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ectonucleotide pyrophosphatase/phosphodiesterase 6 transcript_id : NM_177304.3

name	Stox2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71896640 GeneID:71069 MGI:1918319
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : storkhead box 2 transcript_id : NM_175162.3

name	4930448N21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94383453 GeneID:384817 MGI:1926155
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 Protein product : RIKEN cDNA 4930448N21 gene transcript_id : XM_358744.4

name	D030016E14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62241018 GeneID:320714 MGI:2444585
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA D030016E14 gene transcript_id : NM_177240.3

name	Rwdd4a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56785408 GeneID:192174 MGI:2681000
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RWD domain containing 4A transcript_id : NM_203507.2

name	Sorbs2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124301206 GeneID:234214 MGI:1924574
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : Arg/Abl-interacting protein ArgBP2 product : sorbin and SH3 domain containing 2 protein_id : NP_766340.3

name	Pdlim3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7948997 CCDS:CCDS22281.1 GeneID:53318 MGI:1859274
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence IPI]; GO:0030018 - Z disc [Evidence TAS] GO_function : GO:0008092 - cytoskeletal protein binding [Evidence IPI]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence TAS]; GO:0008307 - structural constituent of muscle [Evidence TAS] [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007015 - actin filament organization [Evidence IDA]; GO:0007507 - heart development [Evidence IMP]; GO:0007519 - striated muscle development [Evidence IMP] codon_start : 1 note : actinin alpha 2 associated LIM protein product : PDZ and LIM domain 3 protein_id : NP_058078.1

name	Ccdc110 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701744 CCDS:CCDS22282.1 GeneID:212392 MGI:2685018
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 product : coiled-coil domain containing 110 protein_id : NP_001028418.1

name	1700029J07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677532 CCDS:CCDS22283.1 GeneID:69479 MGI:1916729
definition	codon_start : 1 product : hypothetical protein LOC69479 protein_id : NP_001028320.1

name	1810047C23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20149754 CCDS:CCDS22284.1 GeneID:192169 MGI:1913679
definition	codon_start : 1 product : Ufm1-specific protease 2 protein_id : NP_619609.1

name	Ankrd37 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:88319966 CCDS:CCDS22285.1 GeneID:654824 MGI:3603344
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 product : ankyrin repeat domain 37 protein_id : NP_001034651.1

name	Lrp2bp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312872 CCDS:CCDS22286.1 GeneID:67620 MGI:1914870
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] codon_start : 1 note : megalin-binding protein product : LRP2 binding protein protein_id : NP_080554.1

name	Snx25 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75832039 CCDS:CCDS22287.1 GeneID:102141 MGI:2142610
definition	GO_function : GO:0035091 - phosphoinositide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 exception : mismatches in translation product : sorting nexin 25 protein_id : NP_997096.1

name	4933411K20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385210 CCDS:CCDS22288.1 GeneID:66756 MGI:1914006
definition	codon_start : 1 product : hypothetical protein LOC66756 protein_id : NP_080023.1

name	Slc25a4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:91680541 GeneID:11739 MGI:1353495
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA] [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006839 - mitochondrial transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : adenine nucleotide translocator 1, skeletal muscle; adenine nucleotide translocase-1 product : solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 protein_id : NP_031476.2

name	LOC100039875 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149258744 GeneID:100039875
definition	codon_start : 1 product : similar to LOC654472 protein protein_id : XP_001473700.1

name	Helt (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982939 CCDS:CCDS22290.1 GeneID:234219 MGI:3040955
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0030182 - neuron differentiation [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : Heslike; bHLH transcription factor megane; mesencephalic GABAergic neurons enhancer of split related protein product : Hey-like transcription factor protein_id : NP_776150.2

name	LOC667337 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94383452 GeneID:667337
definition	codon_start : 1 product : hypothetical protein protein_id : XP_995021.1

name	Acsl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560705 CCDS:CCDS22291.1 GeneID:14081 MGI:102797
definition	EC_number : 6.2.1.3 GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005777 - peroxisome [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0004467 - long-chain-fatty-acid-CoA ligase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA] GO_process : GO:0006631 - fatty acid metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : acetyl-Coenzyme A synthetase; acetyl-Coenzyme A synthetase 1 (ADP forming); acetyl-CoA synthetase; acetate-CoA ligase; fatty acid Coenzyme A ligase, long chain 2 product : acyl-CoA synthetase long-chain family member 1 protein_id : NP_032007.2

name	Mlf1ip (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47523382 CCDS:CCDS22292.1 GeneID:71876 MGI:1919126
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0000775 - chromosome, pericentric region [Evidence IEA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : MLF1-interacting protein product : myeloid leukemia factor 1 interacting protein protein_id : NP_082249.1

name	Ccdc111 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47564100 GeneID:408022 MGI:3603756
definition	codon_start : 1 product : coiled-coil domain containing 111 protein_id : NP_001001184.1

name	Casp3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753284 CCDS:CCDS22294.1 GeneID:12367 MGI:107739
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0030693 - caspase activity [Evidence IMP] [Evidence IDA]; GO:0004861 - cyclin-dependent protein kinase inhibitor activity [Evidence IMP]; GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IMP] [Evidence IDA] GO_process : GO:0006915 - apoptosis [Evidence IMP]; GO:0001782 - B cell homeostasis [Evidence IMP]; GO:0045165 - cell fate commitment [Evidence IMP]; GO:0006309 - DNA fragmentation during apoptosis [Evidence IMP]; GO:0007507 - heart development [Evidence IGI]; GO:0006917 - induction of apoptosis [Evidence IMP] [Evidence IDA] [Evidence IGI]; GO:0008631 - induction of apoptosis by oxidative stress [Evidence IDA]; GO:0008625 - induction of apoptosis via death domain receptors [Evidence IMP]; GO:0030216 - keratinocyte differentiation [Evidence IMP]; GO:0046007 - negative regulation of activated T cell proliferation [Evidence IMP]; GO:0030889 - negative regulation of B cell proliferation [Evidence IMP]; GO:0045736 - negative regulation of cyclin-dependent protein kinase activity [Evidence IMP]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IMP]; GO:0001836 - release of cytochrome c from mitochondria [Evidence IGI]; GO:0009411 - response to UV [Evidence IGI]; GO:0009611 - response to wounding [Evidence IDA]; GO:0007605 - sensory perception of sound [Evidence IMP]; GO:0043029 - T cell homeostasis [Evidence IMP] codon_start : 1 product : caspase 3, apoptosis related cysteine protease protein_id : NP_033940.1

name	Irf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982243 CCDS:CCDS22295.1 GeneID:16363 MGI:96591
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : interferon regulatory factor 2 protein_id : NP_032417.2

name	Enpp6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893409 GeneID:320981 MGI:2445171
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0008889 - glycerophosphodiester phosphodiesterase activity [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0019695 - choline metabolism [Evidence IDA]; GO:0016042 - lipid catabolism [Evidence IEA]; GO:0009117 - nucleotide metabolism [Evidence IEA] codon_start : 1 product : ectonucleotide pyrophosphatase/phosphodiesterase 6 protein_id : NP_796278.1

name	Stox2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71896641 GeneID:71069 MGI:1918319
definition	codon_start : 1 exception : mismatches in translation product : storkhead box 2 protein_id : NP_780371.2

name	4930448N21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51764091 GeneID:384817 MGI:1926155
definition	codon_start : 1 product : hypothetical protein LOC384817 protein_id : XP_358744.2

name	D030016E14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62241019 CCDS:CCDS22296.1 GeneID:320714 MGI:2444585
definition	codon_start : 1 product : hypothetical protein LOC320714 protein_id : NP_796214.2

name	Rwdd4a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45356139 CCDS:CCDS22297.1 GeneID:192174 MGI:2681000
definition	codon_start : 1 product : RWD domain containing 4A protein_id : NP_987103.1

name	LOC667325 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667325
definition	number : 1 pseudo : _no_value

name	LOC621269 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149258742 GeneID:621269
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 1059 ESTs, 41 Proteins product : similar to beta-actin pseudo : _no_value transcript_id : XR_031311.1

clone name	MSMg01-335A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-213K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507D01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-153J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146C22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-528G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135N03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-291B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-207J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-192J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-191I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201F06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222B22
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-146C22.T7 (MSMg01no146_c22.b1)	MSMg01-146C22.TJ (MSMg01no146_c22.g1)
ACC	AG349788	AG349789
length	1,219	1,177
length of high quality (start - end)	563 (125 - 687)	631 (136 - 766)
definition	CHROMAT_FILE: MSMg01no146_c22.b1 PHD_FILE: MSMg01no146_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:39 2005	CHROMAT_FILE: MSMg01no146_c22.g1 PHD_FILE: MSMg01no146_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:39 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	plural
sequence	CCGTGCTTTNNNNNATCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX XCGCGGAATTCACTTGATATGCACTCACCATAAAGAGGATATTAGCCTGG AAACCTATAATACCCAAGCCTANATTTGCAAAACACAAGAAAATTAAGCA GAAGGAAGACTTCATTCCTCCCCTAGAACAGGGAACAAGATAGTGGAAGG AGTTACAGAGACAAAGTTTGGAGTTGAGACAAAAGGATGGACCATCCAGA GACTGCCCCACCCAGGGGTCCACCCCACAATCAGCCACCAAACACAGACT CTTGCATATGCCACCAAGATTATGCTGAAAGGACCCTGATATAGCTATCT CTTGTGAGGCTATGCCAGGGCCTGGCAAATACAGAAGTGGATGCTCACAG TCATCTATTGTATGGAACACAGGGGCCCCAATGGAGGAGCTAGAGAAAGT ACCCAAGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACAACAATAGG AACTACCTAGTATCCCCAGAGCTCCTGTCTCTAGCTAAGTATGTAGCAGA AGATGGCCTAGTCAGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAA ACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTG GGTGGGTAGGGAAGCAGGGCAGGGGGGCGGTATAGGGGACTTTTGGGATA ACATTTGAAATGTACATGATGAAGATTATCTTCTACAATATATTTATCGA AAAGTAACCACTGATGCGCGCTATATTCTCAGTATGGTTAAATCTAAAAA TGCCTTTTGAAGGCTCCTGTATGAAAGGTTGGATTGCCCGCTGCAGGGTT TCTCAAGATATTCGTTGGATCTTGAGTGCTTCAAATTGAACCTTCGATAT CTTTGTCGCTGATTTCTTCACCGAAAGGACTTGTTTCATTTTTTTTCTTG TTTTCATGCGTTTAATTTCTATCCTTCCGCTTGTCTTTCCTTCTTATTAT CCTCTTTATTTCTTCTGTTTTCTCCTGTTTTATGTTCATCTCCCTTTTTT CCTCTACATTATTTCCTTCTTCGTGCATTTGCTTTTACTTATTTCTCCTC CTATTTCCTTTTATCTTCTCTTTTTCCTTTTTATTTCATTCTTTTGTTTA TTTTATATCTAATTCCTCTTCCTCTTTAATCTCTACTTATTCTTTCTTTG TCCTTATTCCTGTTCCTTT	CCCCTTTTTTNNNAACGCATGGAGNCTGGGGCGCCXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXCCATAAAAACTGCAGTTCACATTGT TGTGAGCTGCTATGCCTTAATTCTGGCGGAGCAGGCAGTGCTCTTAACCC CCAAACCATCTTTCTGGCTCTACCGACAATTTTGTTTGTTTGTTTGTTTT TCGAGACAGGGTTTCTCAGTGTAGCCCTGGATGTCCTGGAACTCACTCTG TAAACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAA GTGCCGGGATTAAAGGCGTGCGCCACCACGCCCGTCGACAATTTTTTATA TGAGTTTATGTAGTAATTTTAAATGATGTGTTTAAACTTACGAGTAAATT GTTTATGCTGCTGTATTGTCAGTGTCCTGGCGATGACTCATCTCTTTTGT AACAAGGTATTTGTATATTTGTCCTGGTGAGAGAGAAATCCAAAACATAA ACCATACATTATGTACGTACGCTTGTTTTTAGCATGTTTGTAAAGCACTT GAGGAGTTTTACAATGTTCAGTGCTCAGCCGAAGATGTTTTCAACCTGGA TTCCAGCACTGAAGAGAAATTTAGCCGACACCTAATATTTCAGCTCCACA ATGTGGCATTTAAAGATAACAGGCATGCTGGTGAGTACCTTTAAAAGATT CTAGTTATATTCAAAACCTGTATTTTCCTACTTCTCTTGAAATTTTCTAA AGGTTGCTTGCCTATTCTAAATATATGAAGTGAAGTTTTCTTGACTGCCC TAAGTTCTTGCCTTTTCTATATCAGGAAGTTTCACCTACTAATGATATCA TTGCTATTATTGCCTCTTATCATACACTTTGTTACTACTTTGATAGTCCT GTATCTGGTTTCTGTTTCACTAGAATTCTTTTCACCTTTCTGGCAAACTC CTTATAAAGCTTCAATTTTGGATTTCCAAATTTTTGTATTTTCTCAACCT TTGTTTCACCCTATCATAACTCTTATTTTCTTTCTTCTTGACTCCCTTTC TTTCTCTCTCTTTCTTCATCTTCTCCCAACTCTATCTCCTACATATTCTT CTTTATTTGTTATCCATCTCTTCTCTTTTATATCACTAATCTCTTATTTT TCTTGTCTTCGAGTATTTATTTTTCTC
quality values	Open. Hide. 8 8 8 8 8 7 7 8 3 0 0 0 0 0 3 8 6 7 7 7 10 8 9 9 8 8 8 8 10 8 15 22 22 9 8 8 12 15 23 28 28 36 28 28 33 33 33 36 37 47 50 53 53 57 57 57 57 43 43 57 38 38 36 36 36 36 31 31 31 37 37 41 39 25 25 9 9 9 9 9 9 9 7 8 8 8 8 10 12 25 30 32 37 41 33 36 53 53 53 53 53 53 50 50 50 36 36 36 33 33 33 33 33 25 27 11 9 7 7 6 8 3 0 3 13 17 32 32 33 39 39 43 59 30 31 14 14 13 13 18 28 37 44 57 57 57 57 53 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 52 62 62 68 68 68 68 62 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 68 68 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 44 39 27 14 14 16 27 43 39 43 62 62 62 62 68 68 62 62 62 62 62 62 62 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 62 62 62 52 52 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 52 52 52 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 44 44 33 33 42 44 59 57 57 52 57 57 59 59 59 59 35 41 35 57 57 59 59 59 59 59 59 57 59 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 44 44 31 31 31 42 42 59 41 24 15 15 21 32 32 47 47 47 44 44 43 40 32 30 17 17 17 32 32 43 43 43 43 43 48 46 46 43 43 43 43 43 43 43 43 46 43 39 39 42 39 39 33 40 30 28 28 23 32 30 23 23 28 28 28 32 28 21 27 19 15 15 19 15 13 10 10 10 10 12 13 26 17 17 12 22 13 10 10 19 23 24 28 21 16 12 12 12 17 10 9 9 10 8 13 8 8 8 8 8 9 9 10 9 10 8 8 10 10 8 8 8 8 8 8 8 8 8 10 15 23 13 10 10 10 15 14 10 11 11 15 10 11 11 10 10 10 11 11 17 19 19 18 11 11 9 9 9 15 10 10 10 13 10 8 8 8 8 8 9 10 13 15 15 12 10 10 10 10 9 8 10 15 13 10 11 10 9 12 10 9 9 9 9 18 15 14 10 9 9 9 9 9 9 9 9 12 9 8 8 8 8 8 8 8 10 9 9 10 10 15 17 14 8 8 9 9 9 8 8 6 6 6 8 10 13 13 10 8 10 10 8 8 8 8 9 8 8 8 8 8 8 11 10 10 11 11 11 10 12 8 8 6 6 8 10 8 8 8 8 8 8 10 7 7 7 7 8 8 10 9 9 8 8 6 6 6 8 9 11 8 13 6 6 8 8 9 9 9 10 13 15 13 8 8 8 8 8 8 10 10 10 11 11 8 10 9 13 10 8 10 8 9 13 10 10 10 15 12 11 9 10 8 6 6 6 8 8 9 11 10 8 8 6 6 8 8 8 8 8 8 8 10 10 15 8 8 8 6 6 10 10 10 10 10 10 12 9 8 8 7 7 8 8 8 8 6 6 8 8 8 8 8 8 8 8 6 6 8 8 8 9 10 10 11 17 10 10 10 10 10 10 10 10 10 10 10 8 11 8 8 8 8 10 10 10 11 8 13 13 14 9 10 9 9 9 9 9 9 11 11 10 10 10 9 9 8 8 8 12 8 8 8 8 9 9 9 10 8 8 10 8 8 10 12 10 10 8 8 8 8 8 6 7 11 10 8 8 6 6 8 8 13 9 9 9 9 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 11 8 10 12 12 11 10 10 10 10 10 10 9 9 9 14 11 9 10 10 10 10 10 13 18 18 12 10 10 10 8 8 8 8 8 8 8 10 13 10 10 8 10 8 10 8 8 10 8 8 6 8 6 6 8 8 8 7 8 8 8 6 6 8 10 13 7 6 8 8 10 8 8 6 6 7 8 10 6 6 8 10 10 10 7 7 7 7 8 10 10 10 11 8 8 6 6 6 6 8 6 6 6 6 8 8 9 9 10 10 8 8 8 8	Open. Hide. 7 7 6 6 8 8 8 8 17 3 0 0 0 3 6 6 6 8 6 7 8 10 8 3 0 3 6 6 6 6 8 8 13 8 7 9 9 16 12 19 19 17 9 10 10 19 19 22 20 20 25 28 28 35 35 37 37 35 35 35 35 36 36 36 31 41 37 50 42 47 27 29 8 6 6 6 6 6 9 11 10 10 10 9 10 10 10 10 13 17 11 11 11 21 21 44 33 36 36 36 36 36 38 36 36 31 31 31 31 31 23 23 13 11 8 8 9 9 9 12 13 13 16 17 17 11 11 11 22 23 28 12 13 13 14 15 26 26 37 37 47 47 47 47 47 47 53 53 59 68 68 68 68 68 68 68 68 68 68 68 50 51 50 68 68 68 68 68 50 50 50 50 50 57 57 57 57 57 68 68 68 68 68 59 57 57 57 57 57 57 57 57 57 57 57 59 59 68 68 59 59 59 59 59 57 57 68 57 57 57 59 57 57 57 68 57 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 68 59 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 59 59 52 52 52 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 59 59 59 57 57 57 68 68 68 68 68 68 59 59 57 57 57 57 57 68 57 57 57 48 44 44 43 44 37 37 48 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 68 68 57 57 57 57 57 59 59 59 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 48 48 48 59 59 59 59 41 41 31 15 15 11 11 11 11 12 12 21 30 41 59 59 59 59 59 59 59 59 48 48 48 59 59 59 59 59 59 48 48 48 48 48 48 54 54 54 54 68 68 68 68 68 59 59 57 41 41 28 27 27 28 41 44 47 59 59 57 57 59 59 47 43 43 43 46 46 54 57 57 57 57 59 57 57 57 57 57 57 59 57 68 68 68 57 57 57 57 57 57 54 59 54 57 57 57 57 59 59 59 59 54 57 57 57 57 52 57 57 57 57 68 59 59 59 59 57 57 57 59 59 59 68 68 68 68 57 57 59 59 52 52 52 59 57 57 57 59 52 52 52 57 59 59 59 57 57 59 57 50 50 36 50 50 57 57 57 52 57 57 59 57 59 57 57 57 54 50 50 57 57 57 57 57 57 57 43 43 35 43 42 40 32 35 35 44 42 57 57 57 57 57 43 43 47 37 44 28 22 22 36 38 42 47 47 43 43 47 47 44 44 36 30 25 26 30 31 31 33 47 29 29 28 28 28 33 32 39 43 43 43 37 37 23 23 23 34 32 39 39 39 36 36 43 43 43 40 40 40 43 43 48 37 37 30 30 30 33 37 39 39 31 22 30 17 20 24 32 27 37 28 21 21 21 29 28 34 30 30 15 15 15 25 25 39 39 39 39 39 43 42 42 39 36 36 32 33 33 42 28 33 32 32 20 20 16 25 24 37 24 32 15 15 17 30 32 44 37 36 16 15 15 19 24 30 31 31 42 32 31 28 20 18 12 12 12 13 28 28 43 43 36 32 30 24 20 20 17 17 21 32 39 29 29 28 22 26 26 31 31 22 28 24 30 24 24 19 21 19 13 9 9 9 12 13 10 10 8 8 11 8 11 9 10 12 13 17 12 22 20 30 25 21 11 11 11 13 16 10 19 13 8 8 8 8 13 13 15 17 10 13 10 12 12 24 17 14 11 11 12 12 13 15 10 9 8 8 8 8 8 8 10 10 11 10 11 15 10 10 8 6 6 6 8 8 10 9 10 9 9 9 9 9 8 8 10 10 10 10 10 9 9 9 10 12 13 18 21 20 17 15 19 13 13 8 8 9 9 10 10 10 10 8 8 7 6 8 8 8 8 8 8 8 8 7 7 8 13 13 10 10 9 9 10 8 10 8 10 10 10 10 8 10 10 11 12 10 10 8 8 8 8 8 8 9 9 10 10 9 12 10 8 8 8 8 8 10 16 10 10 8 8 8 8 8 6 8 8 8 9 9 9 10 10 10 9 9 9 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 12 8 8 8 8 10 8 8 8 8 9 8 8 8 9 7 9 9 9 12 12 10 9 9 10 10 11 8 8 8 10 10 11 11 13 12 10 10 8 8 8 8 8 8 8 8 10 11 13 18 13 14 8 10 13 8 10 8 12 8 8 8 8 8 8 9 9 9 9 6 8 7 7 10 8 11 13 14 8 8 6 6 6 6 6 8 8 10 15 13 13 10 10 8 8 8 9 9 9 10 10 11 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 10 10 10 12 8 9 8 11 8 8 8 6 7 8 8 6 6 8 10 6 6 8 8 15 8 8 8 10 18 8 8 8 8 8 8 8 8 10 8 8 8 8 8 6 6 8 8 9 9 9 9 10 8 8 7 7 9 10 10 8 8 6 6 8 8 8 8 8 9 11 11 16 15 12 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no146_c22.g1 MSMg01no146_c22.g1 CHROMAT_FILE:
MSMg01no146_c22.g1 PHD_FILE: MSMg01no146_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:39 2005
         (631 letters)



>mm_chr8_47684588_47685618
          Length = 1031

 Score = 1081 bits (559), Expect = 0.0
 Identities = 613/631 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    cagtgctcttaacccccaaaccatctttctggctctaccgacaattttgtttgtttgttt 60
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1030 cagtgctcttaacccccaaaccatctttctggctctactgacaattttgtttgtttgttt 971

                                                                        
Query: 61   gtttttcgagacagggtttctcagtgtagccctggatgtcctggaactcactctgtaaac 120
            |||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| ||
Sbjct: 970  gtttttcgagacagggtttctctgtgtagccctggctgtcctggaactcactttgtagac 911

                                                                        
Query: 121  caggctggcctcaaactcagaaatctgcctgcctctgcctcccaagtgccgggattaaag 180
            ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 910  caggctggcctcaaactcagaaatctgcctgcctctgccccccaagtgctgggattaaag 851

                                                                        
Query: 181  gcgtgcgccaccacgcccgtcgacaattttttatatgagtttatgtagtaattttaaatg 240
            ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 850  gcgtgtgccaccacacccgtcgacaattttttatatgaatttatgtagtaattttaaatg 791

                                                                        
Query: 241  atgtgtttaaacttacgagtaaattgtttatgctgctgtattgtcagtgtcctggcgatg 300
            ||||||||||||||||||||| |||| | |||||||||||||||||||||||||| ||||
Sbjct: 790  atgtgtttaaacttacgagtacattggtaatgctgctgtattgtcagtgtcctggtgatg 731

                                                                        
Query: 301  actcatctcttttgtaacaaggtatttgtatatttgtcctggtgagagagaaatccaaaa 360
            |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 730  actcatctcttttgtaacaaggtaattgtatatttatcctggtgagagagaaatccaaaa 671

                                                                        
Query: 361  cataaaccatacattatgtacgtacgcttgtttttagcatgtttgtaaagcacttgagga 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670  cataaaccatacattatgtacgtacgcttgtttttagcatgtttgtaaagcacttgagga 611

                                                                        
Query: 421  gttttacaatgttcagtgctcagccgaagatgttttcaacctggattccagcactgaaga 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  gttttacaatgttcagtgctcagccgaagatgttttcaacctggattccagcactgaaga 551

                                                                        
Query: 481  gaaatttagccgacacctaatatttcagctccacaatgtggcatttaaagataacaggca 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550  gaaatttagccgacacctaatatttcagctccacaatgtggcatttaaagataacaggca 491

                                                                        
Query: 541  tgctggtgagtacctttaaaagattctagttatattcaaaacctgtattttcctacttct 600
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 490  tgctggtgagtacctttaaaagattctagttatattcaaaacttgtattttcctacttct 431

                                           
Query: 601  cttgaaattttctaaaggttgcttgcctatt 631
            |||||||||||||| ||||||||||||||||
Sbjct: 430  cttgaaattttctagaggttgcttgcctatt 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information