Query= MSMg01no146_d06.b1 MSMg01no146_d06.b1 CHROMAT_FILE:
MSMg01no146_d06.b1 PHD_FILE: MSMg01no146_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:42 2005
(718 letters)
>mm_chr8_67374458_67375575
Length = 1118
Score = 1299 bits (672), Expect = 0.0
Identities = 708/722 (98%), Gaps = 4/722 (0%)
Strand = Plus / Plus
Query: 1 ctgggaacttagagatgggaattcttcctttccactcccaacttaccgcctaggcaccct 60
||||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||||
Sbjct: 197 ctgggaacttagagatgggaattcttcagttccactccaaacttactgtctaggcaccct 256
Query: 61 cgaggtagagccaggattccaggcttgaaggaaggcaaggtctgagactctc----tact 116
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 257 cggggtagagccaggattccaggcttgaaggaaggcaaggtctgagactctctacttact 316
Query: 117 gtaactgaggcagcactagaccattactggccaaatggttaccgttagttgtataagtga 176
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtaactgaggcagtactagaccattactggccaaatggttaccgttagttgtataagtga 376
Query: 177 tacactcgcggagggaagggagcaggcaagtttagtctagccaaaatacaaaagaaagat 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tacactcgcggagggaagggagcaggcaagtttagtctagccaaaatacaaaagaaagat 436
Query: 237 ggctgaactggagtcagagggattgaaagaagtggtcagattctagatgataaagtgctc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggctgaactggagtcagagggattgaaagaagtggtcagattctagatgataaagtgctc 496
Query: 297 agtaagaattccgatggattatgcttcaggagaagtagcgtccggagtgaacttaaattt 356
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agtaagaattccgatggattaggcttcaggagaagtagcgtccggagtgaacttaaattt 556
Query: 357 ggaagttgacccatgtagaccgtatgtacagtcacaagactagttgaaataagctctgta 416
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggaagttgacccatgtagatcgtatgtacagtcacaagactagttgaaataagctctgta 616
Query: 417 atgtagctacagaaaagaccaagacatgatccctgggccactccagcatcacacgaacgg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atgtagctacagaaaagaccaagacatgatccctgggccactccagcatcacacgaacgg 676
Query: 477 agtgcttgcctgaggaagcacaaggctccatccctagcactgccaataagtacttaaata 536
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 agtgcttgcctgagggagcacaaggctccatccctagcactgccaataagtacttaaata 736
Query: 537 aaataattgcaaaagtgttggtgtgtgcttataatccccgcactcaggaggccaagaaag 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aaataattgcaaaagtgttggtgtgtgcttataatccccgcactcaggaggccaagaaag 796
Query: 597 ggtgctcagtggtgacttgttttaataaagaaaatatgccttgccgtgattaatatctct 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ggtgctcagtggtgacttgttttaataaagaaaatatgccttgccgtgattaatatctct 856
Query: 657 gcatcgttaggccattactgatttgccatgcggagggcctgcatgatgacttccttatgg 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gcatcgttaggccattactgatttgccatgcggagggcctgcatgatgacttccttatgg 916
Query: 717 ct 718
||
Sbjct: 917 ct 918
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 718
Length of database: 1118
Length adjustment: 10
Effective length of query: 708
Effective length of database: 1108
Effective search space: 784464
Effective search space used: 784464
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no146_d06.g1 MSMg01no146_d06.g1 CHROMAT_FILE:
MSMg01no146_d06.g1 PHD_FILE: MSMg01no146_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:42 2005
(655 letters)
>mm_chr8_67492123_67493177
Length = 1055
Score = 814 bits (421), Expect = 0.0
Identities = 455/467 (97%), Gaps = 3/467 (0%)
Strand = Plus / Minus
Query: 1 cgggttacacggatgcaccagcatctccggtctcatttcacgtgagcccccagaggcatt 60
|||||||||||||||||||||||||| ||||||||||||| |||| || ||||||||||
Sbjct: 466 cgggttacacggatgcaccagcatctttggtctcatttcacatgagtcctcagaggcatt 407
Query: 61 ccccaaggcacactttgcccagaagtttccctcgggttttataccccagggatattccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ccccaaggcacactttgcccagaagtttccctcgggttttataccccagggatattccaa 347
Query: 121 aaccagtctttcacgaatgaacttagtgacttctgctaaggaaatcaatctgcttattag 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aaccagtctttcacaaatgaacttagtgacttctgctaaggaaatcaatctgcttattag 287
Query: 181 tacatatttcctttatttttattttttggaccccagaaaaggtatttaaatttgcacaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tacatatttcctttatttttattttttggaccccagaaaaggtatttaaatttgcacaat 227
Query: 241 ttaaagtcaatacatgaatcaggagatgttggtgcatgtcttttatcacagcactcagga 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 226 ttaaagtcaatacatgaatcaggagatgttggtgcatgtcttttatcgcagcactcagga 167
Query: 301 ggcaaaagcagacagttctttgtgagttccg--ggccagcctgatctacctagccaactt 358
|||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 166 ggcagaagcagacagatctttgtgagttccgcgggccagcctgatctacctagccaactt 107
Query: 359 ccaggacagccagggctaattagtgagatcctgtttcaatagctacccaattccccacaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ccaggacagccagggctaattagtgagatcctgtttcaatagctacccaattccccacaa 47
Query: 419 aaaaaaaaaaaaaaaaaaaaaaaaaaaaagcagcatcctaatttgtt 465
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 46 aaaaaaaaaaaaaaaaaaaaaaaaaaaa-gcagcatcctaatttgtt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|