BAC Information

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BAC

Clone NameMSMg01-146D06
Chromosome8 (Build37)
Map Location 67,374,654 - 67,492,588
singlet/doubletdoublet
Overlap geneLOC619647, 3110005G23Rik
Upstream geneEG244495, Tll1, LOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903
Downstream geneTrim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, March1, LOC100040986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146D06.T7 (MSMg01no146_d06.b1)MSMg01-146D06.TJ (MSMg01no146_d06.g1)
ACCAG349804AG349805
length1,2191,205
length of high quality
(start - end)
718 (90 - 807)655 (81 - 735)
definitionCHROMAT_FILE: MSMg01no146_d06.b1 PHD_FILE: MSMg01no146_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:42 2005CHROMAT_FILE: MSMg01no146_d06.g1 PHD_FILE: MSMg01no146_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,374,654 - 67,375,375)(67,492,123 - 67,492,588)
sequence
CCAGTCTTTNNNNAGCATTGGGCGCTATAGACTCCTAAGGGAGAGGATCC
GCGGAATTCTCCACCAATGGCTGCCCGATAAAGACCCTCCTGGGAACTTA
GAGATGGGAATTCTTCCTTTCCACTCCCAACTTACCGCCTAGGCACCCTC
GAGGTAGAGCCAGGATTCCAGGCTTGAAGGAAGGCAAGGTCTGAGACTCT
CTACTGTAACTGAGGCAGCACTAGACCATTACTGGCCAAATGGTTACCGT
TAGTTGTATAAGTGATACACTCGCGGAGGGAAGGGAGCAGGCAAGTTTAG
TCTAGCCAAAATACAAAAGAAAGATGGCTGAACTGGAGTCAGAGGGATTG
AAAGAAGTGGTCAGATTCTAGATGATAAAGTGCTCAGTAAGAATTCCGAT
GGATTATGCTTCAGGAGAAGTAGCGTCCGGAGTGAACTTAAATTTGGAAG
TTGACCCATGTAGACCGTATGTACAGTCACAAGACTAGTTGAAATAAGCT
CTGTAATGTAGCTACAGAAAAGACCAAGACATGATCCCTGGGCCACTCCA
GCATCACACGAACGGAGTGCTTGCCTGAGGAAGCACAAGGCTCCATCCCT
AGCACTGCCAATAAGTACTTAAATAAAATAATTGCAAAAGTGTTGGTGTG
TGCTTATAATCCCCGCACTCAGGAGGCCAAGAAAGGGTGCTCAGTGGTGA
CTTGTTTTAATAAAGAAAATATGCCTTGCCGTGATTAATATCTCTGCATC
GTTAGGCCATTACTGATTTGCCATGCGGAGGGCCTGCATGATGACTTCCT
TATGGCTCAGACAGATCCATCACTAATACTTCCTTAGGATTCGTGATGCA
TCTGTCTGAGTCATTAGAAAAGTTCCCTGTTTTTTAAGCTCTATGCTCTA
TGAATATGTGCATGCTAATTCCTTTCAATCTCTTCTACCATATTGTAATT
CTGCTTCCTTATTGATTCCTCAATTTTGTCCTTATTATCTAAGTTTGTAT
CTTGTCTCACTATTCTGTTTAACTTCATTTTAATCACGTTTCTTTTTTTC
CCCCTTATTTTCTCTCGCTATATTTTATCTCTCTGTATTTCTTCTTTTCC
TTTTTTTCACCCTTCCTTTCTGTTCTTCTTTCCTCTCTTTTCTCATCTTC
TTTCTTTTCTTATCCCTTCCTGTTCTTCTCTACTTTATTANCTAATCTTC
TTAGTCTATTCCCTCTCTC
TTTTTTATGATGTGATGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCACCTTAAACCTCCGCGGGTTACACGGATGCACCA
GCATCTCCGGTCTCATTTCACGTGAGCCCCCAGAGGCATTCCCCAAGGCA
CACTTTGCCCAGAAGTTTCCCTCGGGTTTTATACCCCAGGGATATTCCAA
AACCAGTCTTTCACGAATGAACTTAGTGACTTCTGCTAAGGAAATCAATC
TGCTTATTAGTACATATTTCCTTTATTTTTATTTTTTGGACCCCAGAAAA
GGTATTTAAATTTGCACAATTTAAAGTCAATACATGAATCAGGAGATGTT
GGTGCATGTCTTTTATCACAGCACTCAGGAGGCAAAAGCAGACAGTTCTT
TGTGAGTTCCGGGCCAGCCTGATCTACCTAGCCAACTTCCAGGACAGCCA
GGGCTAATTAGTGAGATCCTGTTTCAATAGCTACCCAATTCCCCACAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGCAGCATCCTAATTTGTTAGGAA
TGAACGTGATAGCTAACCTTGGTTGTCAACTTGACTACATCAGGATTAAC
TCAGACAGCTGGGCACACCCACGAGGGTTTCTCAGTTGGATTATAGAGGG
AGAAGACCCACTCTAAAGCCGACCACACCTCCTGGGGCAGCCCCATAAAG
GACACGGAGGGAAGGGCTTCTGCTTCCTACCTGCTTCTCACTGGCATTCT
GTCTATCCCACTCTTCAGCCGTTCCTTCCTGGTATTAGAACTGACTTCTT
CAGGATTCCAAAGTGGACTGAAAACTGGCAGCTCTCTAGGACTTTTCTGG
GACTCCCGAACCAGACTGTAATTGCTCACACTTCTACTCCTAAGGGTTAA
ACACAAGCCAGATTCTTGTCTTTTGTGTCAAAGACTGTCTTAAGTTGGTT
ACTAAAATTCCTTACTTTCTTTTCTTACTACCTTCCTTACTTACCTACCT
TACCTTCCTTACCTTCTTAACTTCCTGGGTTCTTGGTCCTTAAATATCTT
TGGGTTGGTTCTTGGGAAATCTCTCCCCTGTGCATTTTTTCTGTATCCCT
CTTACTCGAAGCGTCCTGGGGAACTCTTTGGTGAAACTTGATAATCTTAT
ATCTTGTTCTCTATTACATAGGTTGTTTCTATCTCTTTGTATTATGGTGC
TATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_d06.b1 MSMg01no146_d06.b1 CHROMAT_FILE:
MSMg01no146_d06.b1 PHD_FILE: MSMg01no146_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:42 2005
         (718 letters)



>mm_chr8_67374458_67375575
          Length = 1118

 Score = 1299 bits (672), Expect = 0.0
 Identities = 708/722 (98%), Gaps = 4/722 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgggaacttagagatgggaattcttcctttccactcccaacttaccgcctaggcaccct 60
           |||||||||||||||||||||||||||  ||||||||| ||||||| | |||||||||||
Sbjct: 197 ctgggaacttagagatgggaattcttcagttccactccaaacttactgtctaggcaccct 256

                                                                       
Query: 61  cgaggtagagccaggattccaggcttgaaggaaggcaaggtctgagactctc----tact 116
           || |||||||||||||||||||||||||||||||||||||||||||||||||    ||||
Sbjct: 257 cggggtagagccaggattccaggcttgaaggaaggcaaggtctgagactctctacttact 316

                                                                       
Query: 117 gtaactgaggcagcactagaccattactggccaaatggttaccgttagttgtataagtga 176
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtaactgaggcagtactagaccattactggccaaatggttaccgttagttgtataagtga 376

                                                                       
Query: 177 tacactcgcggagggaagggagcaggcaagtttagtctagccaaaatacaaaagaaagat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tacactcgcggagggaagggagcaggcaagtttagtctagccaaaatacaaaagaaagat 436

                                                                       
Query: 237 ggctgaactggagtcagagggattgaaagaagtggtcagattctagatgataaagtgctc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggctgaactggagtcagagggattgaaagaagtggtcagattctagatgataaagtgctc 496

                                                                       
Query: 297 agtaagaattccgatggattatgcttcaggagaagtagcgtccggagtgaacttaaattt 356
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agtaagaattccgatggattaggcttcaggagaagtagcgtccggagtgaacttaaattt 556

                                                                       
Query: 357 ggaagttgacccatgtagaccgtatgtacagtcacaagactagttgaaataagctctgta 416
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggaagttgacccatgtagatcgtatgtacagtcacaagactagttgaaataagctctgta 616

                                                                       
Query: 417 atgtagctacagaaaagaccaagacatgatccctgggccactccagcatcacacgaacgg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atgtagctacagaaaagaccaagacatgatccctgggccactccagcatcacacgaacgg 676

                                                                       
Query: 477 agtgcttgcctgaggaagcacaaggctccatccctagcactgccaataagtacttaaata 536
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 agtgcttgcctgagggagcacaaggctccatccctagcactgccaataagtacttaaata 736

                                                                       
Query: 537 aaataattgcaaaagtgttggtgtgtgcttataatccccgcactcaggaggccaagaaag 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aaataattgcaaaagtgttggtgtgtgcttataatccccgcactcaggaggccaagaaag 796

                                                                       
Query: 597 ggtgctcagtggtgacttgttttaataaagaaaatatgccttgccgtgattaatatctct 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ggtgctcagtggtgacttgttttaataaagaaaatatgccttgccgtgattaatatctct 856

                                                                       
Query: 657 gcatcgttaggccattactgatttgccatgcggagggcctgcatgatgacttccttatgg 716
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gcatcgttaggccattactgatttgccatgcggagggcctgcatgatgacttccttatgg 916

             
Query: 717 ct 718
           ||
Sbjct: 917 ct 918


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 718
Length of database: 1118
Length adjustment: 10
Effective length of query: 708
Effective length of database: 1108
Effective search space:   784464
Effective search space used:   784464
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no146_d06.g1 MSMg01no146_d06.g1 CHROMAT_FILE:
MSMg01no146_d06.g1 PHD_FILE: MSMg01no146_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:42 2005
         (655 letters)



>mm_chr8_67492123_67493177
          Length = 1055

 Score =  814 bits (421), Expect = 0.0
 Identities = 455/467 (97%), Gaps = 3/467 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgggttacacggatgcaccagcatctccggtctcatttcacgtgagcccccagaggcatt 60
           ||||||||||||||||||||||||||  ||||||||||||| |||| || ||||||||||
Sbjct: 466 cgggttacacggatgcaccagcatctttggtctcatttcacatgagtcctcagaggcatt 407

                                                                       
Query: 61  ccccaaggcacactttgcccagaagtttccctcgggttttataccccagggatattccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ccccaaggcacactttgcccagaagtttccctcgggttttataccccagggatattccaa 347

                                                                       
Query: 121 aaccagtctttcacgaatgaacttagtgacttctgctaaggaaatcaatctgcttattag 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aaccagtctttcacaaatgaacttagtgacttctgctaaggaaatcaatctgcttattag 287

                                                                       
Query: 181 tacatatttcctttatttttattttttggaccccagaaaaggtatttaaatttgcacaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tacatatttcctttatttttattttttggaccccagaaaaggtatttaaatttgcacaat 227

                                                                       
Query: 241 ttaaagtcaatacatgaatcaggagatgttggtgcatgtcttttatcacagcactcagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 226 ttaaagtcaatacatgaatcaggagatgttggtgcatgtcttttatcgcagcactcagga 167

                                                                       
Query: 301 ggcaaaagcagacagttctttgtgagttccg--ggccagcctgatctacctagccaactt 358
           |||| |||||||||| |||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 166 ggcagaagcagacagatctttgtgagttccgcgggccagcctgatctacctagccaactt 107

                                                                       
Query: 359 ccaggacagccagggctaattagtgagatcctgtttcaatagctacccaattccccacaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ccaggacagccagggctaattagtgagatcctgtttcaatagctacccaattccccacaa 47

                                                          
Query: 419 aaaaaaaaaaaaaaaaaaaaaaaaaaaaagcagcatcctaatttgtt 465
           |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 46  aaaaaaaaaaaaaaaaaaaaaaaaaaaa-gcagcatcctaatttgtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)