Query= MSMg01no146_p19.b1 MSMg01no146_p19.b1 CHROMAT_FILE:
MSMg01no146_p19.b1 PHD_FILE: MSMg01no146_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:26 2005
(525 letters)
>mm_chr8_72774262_72775186
Length = 925
Score = 992 bits (513), Expect = 0.0
Identities = 522/525 (99%)
Strand = Plus / Minus
Query: 1 taccaccactgcctggagagacattatctttttgttttgtttttgaggtagccttaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 taccaccactgcctggagagacattatctttttgttttgtttttgaggtagccttaatta 833
Query: 61 tgtagatatgtagccctggctagcctggaactcacaatgtacaccaaggctgtcctcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tgtagatatgtagccctggctagcctggaactcacaatgtacaccaaggctgtcctcaaa 773
Query: 121 ctcatcgagatctgtctgtctccagagtgctgggattaaaggtgtgcaatcgaacatctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ctcatcgagatctgtctgtctccagagtgctgggattaaaggtgtgcaatcgaacatctg 713
Query: 181 ttggattcctttcccactttggtgagcagccatgagggagctcagagcctaggaagctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ttggattcctttcccactttggtgagcagccatgagggagctcagagcctaggaagctgc 653
Query: 241 aggctcacactgccctgcagtatctcggcagacagcgcctcttacatggccacttggtca 300
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct: 652 aggctcacactgccctgcagcaccacggcagacagcgcctcttacatggccacttggtca 593
Query: 301 agtgctttgtgggctttccctgtgccactgagggaggtatggcaagactgaggggagtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 agtgctttgtgggctttccctgtgccactgagggaggtatggcaagactgaggggagtct 533
Query: 361 gagacacctgcagatgtactaaggacagctgaataagccaggctgaggtggtcacctcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gagacacctgcagatgtactaaggacagctgaataagccaggctgaggtggtcacctcac 473
Query: 421 cacctctctcaggtacaaggatgtcaaatctctgctggctgtgaagaacagaaggaatgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cacctctctcaggtacaaggatgtcaaatctctgctggctgtgaagaacagaaggaatgg 413
Query: 481 gaacctgtgtactccatttggaccctggcattcaccagctaataa 525
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaacctgtgtactccatttggaccctggcattcaccagctaataa 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_p19.g1 MSMg01no146_p19.g1 CHROMAT_FILE:
MSMg01no146_p19.g1 PHD_FILE: MSMg01no146_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:26 2005
(551 letters)
>mm_chr8_72616682_72617632
Length = 951
Score = 1004 bits (519), Expect = 0.0
Identities = 543/555 (97%), Gaps = 8/555 (1%)
Strand = Plus / Plus
Query: 1 tctgggctatgtgagtcatcactccaaacatatgcaggctctcag----ccccccagcag 56
|||||||||||||||||||||||||||| | |||||||||||||| | |||||
Sbjct: 201 tctgggctatgtgagtcatcactccaaagaaatgcaggctctcagtaaacg----agcag 256
Query: 57 gcaagtgagcgggtgaggggcgggtgagggggccacaggcaagttgaactgttaaaaaat 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gcaagtgagcgggtgaggggcgggtgagggggccacaggcaagttgaactgttaaaaaat 316
Query: 117 ttttattaaaatgtccaataagtccattaacatccacagtgtcagatagcacagatccac 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttttattaaaatgtccaataagtccattaacatccacagtgtcagatagcacagatccac 376
Query: 177 ggaacatcaaagctcccagaaaaacaaaaacaaaacaaaacccagcagaacctgtagcca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggaacatcaaagctcccagaaaaacaaaaacaaaacaaaacccagcagaacctgtagcca 436
Query: 237 ttctcgcacatacacactcctcccgcatactggcccaagcagacacaccagggaggggga 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttctcgcacatacacactcctcccgcatactggcccaagcagacacaccagggaggggga 496
Query: 297 aagctggagatgaggctccagtctagaaaagcctaaagcatgcccctccatggagcaggc 356
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 497 aagctggagatgaggctccagtccagaaaagcctaaagcatgcccctccatggagcaggc 556
Query: 357 agttcaggggctaggaagaacctctgagccccagcaggcctcgccctcaatccccagcag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agttcaggggctaggaagaacctctgagccccagcaggcctcgccctcaatccccagcag 616
Query: 417 gggattggtgtggttccttctgaattagaaaatgttaccaagaagctttgtccccagtca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gggattggtgtggttccttctgaattagaaaatgttaccaagaagctttgtccccagtca 676
Query: 477 cagggacctttacggatcagggtccagtttgcttttctcaaccatttcccaagtctgctc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cagggacctttacggatcagggtccagtttgcttttctcaaccatttcccaagtctgctc 736
Query: 537 gtgtgtgtgtgtgtg 551
|||||||||||||||
Sbjct: 737 gtgtgtgtgtgtgtg 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
