Query= MSMg01no147_d03.b1 MSMg01no147_d03.b1 CHROMAT_FILE:
MSMg01no147_d03.b1 PHD_FILE: MSMg01no147_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:43 2005
(648 letters)
>mm_chr8_53557519_53558565
Length = 1047
Score = 1189 bits (615), Expect = 0.0
Identities = 636/643 (98%), Gaps = 1/643 (0%)
Strand = Plus / Minus
Query: 5 gaattctgaatgatctctgatccataaaatatcataagcttctaccagtcatagggtctc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 gaattctgaatgatttctgatccataaaatatcataagcttctaccagtcatagggtctc 787
Query: 65 ttccttgacctcacgaaactaagactatgatgaaaagcatggctctggataaccttgtca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ttccttgacctcacgaaactaagactatgatgaaaagcatggctctggataaccttgtca 727
Query: 125 ttatggcccacaaaacagacctagagaagtttactacccacttcactgctatttccatca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ttatggcccacaaaacagacctagagaagtttactacccacttcactgctatttccatca 667
Query: 185 gagtaaacacactgatagcaattaaaattactatagactttcagtctgtcaggaattacc 244
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 666 gagtaaacacactgagagcaattaaaattactatagtgtttcagtctgtcaggaattacc 607
Query: 245 tttatatttaaatataaagtagcagaaattttaaaaaatgagtaagactaactttttcat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tttatatttaaatataaagtagcagaaattttaaaaaatgagtaagactaactttttcat 547
Query: 305 taattgataagttcatgcactcatccttggtagcaattttttagagaaatttagctgtgg 364
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 546 taattgataagttcatgcactcatccttggtagcaattctttagagaaatttaactgtgg 487
Query: 365 ggaagattgctcaggttcttgtatattgatattctggatatgttcatttcgaaattatat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ggaagattgctcaggttcttgtatattgatattctggatatgttcatttcgaaattatat 427
Query: 425 ttcactaaagctttacatatttagttgtactatgttgatgaaaatgtaaatttctagtca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttcactaaagctttacatatttagttgtactatgttgatgaaaatgtaaatttctagtca 367
Query: 485 acttgaatttccttctaaaatttggactgatccaactttctgacaatgaaatctgttatg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 acttgaatttccttctaaaatttggactgatccaactttctgacaatgaaatctgttatg 307
Query: 545 aacaataataggttatttttttataatatcttcgagtataggttatgtaaatttgttgaa 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 306 aacaataataggttatttttttataatatcttcgagtataggttatgtaaatttgttg-a 248
Query: 605 aaaaatagaaactcacaaaattttatacagatattggagacct 647
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaaaatagaaactcacaaaattttatacagatattggagacct 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1047
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1037
Effective search space: 661606
Effective search space used: 661606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_d03.g1 MSMg01no147_d03.g1 CHROMAT_FILE:
MSMg01no147_d03.g1 PHD_FILE: MSMg01no147_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:43 2005
(639 letters)
>mm_chr8_53428630_53429668
Length = 1039
Score = 1065 bits (551), Expect = 0.0
Identities = 608/639 (95%), Gaps = 20/639 (3%)
Strand = Plus / Plus
Query: 1 actctcgcacctgcgtacaaggcttgtttactagttaggcacagcggaggcccgcgccat 60
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 221 actctcgcacctgtgtacaaggcttgtttactagttaggcacagtggaggcccgcgcaat 280
Query: 61 cttataatggcgattgctggcggcacgcacggctctcctcagagattactggcggcacgc 120
|||||||||||||||||| ||||||| ||| |||||||||||||||||||||| |||| |
Sbjct: 281 cttataatggcgattgctcgcggcacacactgctctcctcagagattactggcagcacac 340
Query: 121 acgcgattgctcgcagcatgtactggctctccacatgcccccatcacagacacacacaca 180
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 341 acgcgattgctcgcagcacgtaccggctctccacatgcccccatcacagacacacacaca 400
Query: 181 cacacacacacacacacacacacacacacacacacacacacttacacacatagacgagtt 240
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 401 cacacacacacacacacacacacacacacacacacac----ttacacacatagacgagtt 456
Query: 241 ttgagacatatctgaacatgaatcctcagaaacaaagctacatactcctatcacacacac 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 457 ttgagacatatctgaacatgaatcctcagaaacaaagcttcatactcctatcacacacac 516
Query: 301 acatacacacacacacacacacacactcacaacacacacatactcacacaaacatggact 360
||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aca----------------cacacactcacaacacacacatactcacacaaacatggact 560
Query: 361 ttaaacacagaaattaaattaaaaaataatcaaggttcatacttgattagaaaactaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaaacacagaaattaaattaaaaaataatcaaggttcatacttgattagaaaactaatt 620
Query: 421 attaattaaacttaaaaacattagttaaaattaaaattaatgttttagggagtgtttagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attaattaaacttaaaaacattagttaaaattaaaattaatgttttagggagtgtttagg 680
Query: 481 tacattagtaaaaatctaatattcttagaaaaatgaccacatggctaaagcataaagatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacattagtaaaaatctaatattcttagaaaaatgaccacatggctaaagcataaagatg 740
Query: 541 ttacccaaagcaacagaacagatttagtctgatcttaatattttcacttcaaagacatgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttacccaaagcaacagaacagatttagtctgatcttaatattttcacttcaaagacatgt 800
Query: 601 ttcaacaggcactgtacatatgctcaaaaattgattcag 639
|||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttcaacaggcactgtacatatgctcaaaaattgattcag 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 91
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
