BAC Information

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BAC

Clone NameMSMg01-147H02
Chromosome8 (Build37)
Map Location 111,994,909 - 112,132,727
singlet/doubletdoublet
Overlap genePmfbp1, Dhx38, Txnl4b, Hp, Dhodh
Upstream geneAtbf1, 4922502B01Rik, Gm1943, LOC100042829
Downstream genePkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147H02.T7 (MSMg01no147_h02.b1)MSMg01-147H02.TJ (MSMg01no147_h02.g1)
ACCAG350712AG350713
length715725
length of high quality
(start - end)
398 (55 - 452)288 (85 - 372)
definitionCHROMAT_FILE: MSMg01no147_h02.b1 PHD_FILE: MSMg01no147_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:02 2005CHROMAT_FILE: MSMg01no147_h02.g1 PHD_FILE: MSMg01no147_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,994,909 - 111,995,299)(112,132,440 - 112,132,727)
sequence
CGNNCCTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAACAGTAACACTTTTAACTTTTAAGGGATGACTTTA
GATCACGACGTGGAAGGAAACAGCTGAGGATGTTTGTCGACTTTCTAGGC
TGGCCTTTTAAAAAGCTGGAGGGGAAAAAGGAGCGAGGGAGAGAAGAGGG
GAGAGAGAGAGATTTCTCTTTTCTCTTAGGGACCTATGTAGATATGCAAC
ACAAGGGTATATTTTTGCATGTGTGTATGTATAAGGTGTGTGTGTATGTG
TGTTCACACATGTGCTCCCTAGTGTGTGTGCATAAGAACACATATACTAT
GTGTGGAGGCCCAAAGTTGACGGTGGATATCTTTCTCAAGACCTCTCTAC
CTTACCCTCTGGGGCAGGGTCTCTTGCGAACCTGGAGCTCTCGGACTCCG
CCAGTCCAGCTAGCCAACTCTCCCCCATCCCTGACACGAGGAGTGATGAG
ATTACAGGTAGCTGCCATACCTGCCTGGCTTTTCTCTGGCAGTCCAACTT
CCACGTCCTCTAGGAATCCTAAGTCCAGTTCTCACGCCTCCATGGTATGC
ATTTCACCCACCAACTCATCTCCTCGGCCTCCAAGAATCTTTTTCTTCCG
ATATACCTATCATCCTATGGCGTGCATCCTTAGGTGGAGAGGTAGGGGCT
GGCTGACCGGAGTAN
CCCCCTCCTCCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGGATTTCTGTTTC
AGAAAGGGGGCTATGAAAGCCATACCGCAGCACCGGCATAAAGACAACCG
TGCGGAACCTTCGGGCTGCATCGCCCTTTGTTTCCTTCCCAGGGACAGGG
AAGCATTAGGGTAGTGCGCACTACCGGGCGCTGGGGTTGGTCTGCAGATT
TCGGAAGCGTCTGCTCCCCACTCGAGACTTCCGGAAGCCTCCTCCTCACG
GTTGCACCGAAGGAAGGGTGCGCGACTTCAGAGCAGCGTCCCTTAGGAGG
CGCGACAGCGACAAGACAGAAAGTAGGCACGTCCCGCCACGGAGCCTGAC
TCCGGTTAGAGCGCACGCGCTCGGCCGTCTAATCCACGCCTAGGGCTGGC
CCGGCTGGTGTTCCTTGTTAGATAGGTGGAGCCGAGCCCACATTCTCTAA
TGGGATGCAGGCAGAGGCGGGTTTAATGGCATAAGGAGAATGGCGCGCAG
ACAGCTGAAAGTGAGTCCTGCGCGGCGCAGCTCACTCGATGGTGAGGATA
ACCGGTCGTGCAGGCCATGATGTCTGGTAACCCGAAATGCCTGCCCCCCC
TTTGCAACAGTGTCCTCGTCCCGCGTATAGATACACTGCCTGCCATCAAG
CAAGCCGTTAGGTGGCCCACAAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_h02.b1 MSMg01no147_h02.b1 CHROMAT_FILE:
MSMg01no147_h02.b1 PHD_FILE: MSMg01no147_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:02 2005
         (398 letters)



>mm_chr8_111994705_111995502
          Length = 798

 Score =  741 bits (383), Expect = 0.0
 Identities = 389/391 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacagtaacacttttaacttttaagggatgactttagatcacgacgtggaagga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacagtaacacttttaacttttaagggatgactttagatcacgacgtggaagga 264

                                                                       
Query: 65  aacagctgaggatgtttgtcgactttctaggctggccttttaaaaagctggaggggaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacagctgaggatgtttgtcgactttctaggctggccttttaaaaagctggaggggaaaa 324

                                                                       
Query: 125 aggagcgagggagagaagaggggagagagagagatttctcttttctcttagggacctatg 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggagcgagggagagaaggggggagagagagagatttctcttttctcttagggacctatg 384

                                                                       
Query: 185 tagatatgcaacacaagggtatatttttgcatgtgtgtatgtataaggtgtgtgtgtatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagatatgcaacacaagggtatatttttgcatgtgtgtatgtataaggtgtgtgtgtatg 444

                                                                       
Query: 245 tgtgttcacacatgtgctccctagtgtgtgtgcataagaacacatatactatgtgtggag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgttcacacatgtgctccctagtgtgtgtgcataagaacacatatactatgtgtggag 504

                                                                       
Query: 305 gcccaaagttgacggtggatatctttctcaagacctctctaccttaccctctggggcagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcccaaagttgacggtggatatctttctcaagacctctctaccttaccctctggggcagg 564

                                          
Query: 365 gtctcttgcgaacctggagctctcggactcc 395
           |||||||| ||||||||||||||||||||||
Sbjct: 565 gtctcttgtgaacctggagctctcggactcc 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no147_h02.g1 MSMg01no147_h02.g1 CHROMAT_FILE:
MSMg01no147_h02.g1 PHD_FILE: MSMg01no147_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:02 2005
         (288 letters)



>mm_chr8_112132240_112132927
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaggatttctgtttcagaaagggggctatgaaagccataccgcagcaccggcataaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttaggatttctgtttcagaaagggggctatgaaagccataccgcagcaccggcataaaga 429

                                                                       
Query: 61  caaccgtgcggaaccttcgggctgcatcgccctttgtttccttcccagggacagggaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 caaccgtgcggaaccttcgggctgcatcgccctttgtttccttcccagggacagggaagc 369

                                                                       
Query: 121 attagggtagtgcgcactaccgggcgctggggttggtctgcagatttcggaagcgtctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 attagggtagtgcgcactaccgggcgctggggttggtctgcagatttcggaagcgtctgc 309

                                                                       
Query: 181 tccccactcgagacttccggaagcctcctcctcacggttgcaccgaaggaagggtgcgcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tccccactcgagacttccggaagcctcctcctcacggttgcaccgaaggaagggtgcgcg 249

                                                           
Query: 241 acttcagagcagcgtcccttaggaggcgcgacagcgacaagacagaaa 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 acttcagagcagcgtcccttaggaggcgcgacagcgacaagacagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)