BAC Information

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BAC

Clone NameMSMg01-147N19
Chromosome8 (Build37)
Map Location 86,982,607 - 86,983,020
singlet/doubletsinglet
Overlap geneCacna1a
Upstream geneLOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
Downstream geneIer2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147N19.T7 (MSMg01no147_n19.b1)MSMg01-147N19.TJ (MSMg01no147_n19.g1)
ACCAG351030AG351031
length724726
length of high quality
(start - end)
623 (40 - 662)649 (78 - 726)
definitionCHROMAT_FILE: MSMg01no147_n19.b1 PHD_FILE: MSMg01no147_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:34 2005CHROMAT_FILE: MSMg01no147_n19.g1 PHD_FILE: MSMg01no147_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATTC
CCCAGGTCTCAAAGGAAGCCCTGGCATGCAGGCAGAGGGTCAGTGAGACC
CCAGTCCTTCCTAGCAGGCAGGCAGAGAGTCAGCAAGACCCCAGTCCTTC
CTAGCAGGCAGGCAGAGGGTCAGCGAGACTCCCACTCCTTCTTTGAAACT
TCACTGCATTTATCTGTCAGTTTTCAAAGCGCTGGGGATGGAACCCCGTG
CCTCATGCATGCTAAGCAAGAGCTCTACCTCTGAGTCACATCCTCAGCCC
TCTTTCTAGTTTTTATTTCAAGACAGGATCTCACGCAGTCACCCAGGCTG
GCCTCTGAGTCACACTGCAGCTCAGGGAAGCCTTACAACTACAATTCTCC
TGCCTCAGCCCCCTGAGTTCTCAGAATGACAGACCCACACCCCCAGCTCA
GATCCTGACACTCGATTTCATTTTCTTTTTGTCAAACCCAGATGCATGCG
CTTCCGATTGTCACTTCGCAGGCCCTAAGCATGAGAGTCAGTGCTAGCAT
GCCCCACGCTCTGGTCACACAAAGCATCATGGCCCTTTAAGGATGCAGTC
TGAGCCCTGCATCCACCTGCTGAGTCAGAAGGAGTCGTCTCTGGAGCTTC
TGGGGCTATGTGCAGACACAGTTCAGAAAGCCTCTGCTCCACTTCAGGTT
GGGTGGAAACAGGGGCTCGGATCT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACAGTTCTGTAGTCTTTGGTTTT
TTCAAAACCTACTTTAAATAATGGTTCTCAAATGCTTTAACCTCCCTTCT
AGCCCACCAACCACCAGAGATAGTGGAAAAGAAAGGTTATTAGGATATGG
GGACGTAAACCTCTTTGGAGCAAATCCAATCTGCATTGTCTGGATATCAG
CAGTTCGGTTCACACAGATCAGCAGTAGCAGCTCCATCCACTGGCAAACA
CCATTCATGAATCAGCAACAGGTCAATTCAGAAGAAGCTTCGAGGCTCTG
CTGTACCCTGTTAGACGGTGTTCCTTAGGGGTGATTTCAGTGTCCAATTG
TCAGGATACCAGCAGTCCACCTCAGTAGTGTCAGGAGAGCAAACACCAAT
CAGCAGCAGTGGCTTCTGCTGGATCAGCATGAGTCATCAGAGATGACCAG
GAGCAGCAGGGACACCAGGAGAAGTTCTCTGCCATGACTCTCTCAACAAG
GTGAAAATCAGTGAAGACAAGACTTGAGAACAACAAAGTGTTGCAAAACA
CGCTGTCACTGTCCATTGAGTCCTATTTATACTCCCTCCAGACATCACCT
GTTGTCTCTTGGGTCTTGTCTCAGCAAAATACCATGTGAGTCTATATTAG
CAAAACTCCACTAGAGTCTATATCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_n19.b1 MSMg01no147_n19.b1 CHROMAT_FILE:
MSMg01no147_n19.b1 PHD_FILE: MSMg01no147_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:34 2005
         (623 letters)



>mm_chr8_86981998_86983020
          Length = 1023

 Score =  793 bits (410), Expect = 0.0
 Identities = 413/414 (99%)
 Strand = Plus / Minus

                                                                        
Query: 210  tgcctcatgcatgctaagcaagagctctacctctgagtcacatcctcagccctctttcta 269
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 tgcctcatgcatgctaagcaagagctctacctctgagtcacatcctcagccctctttcta 964

                                                                        
Query: 270  gtttttatttcaagacaggatctcacgcagtcacccaggctggcctctgagtcacactgc 329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963  gtttttatttcaagacaggatctcacgcagtcacccaggctggcctctgagtcacactgc 904

                                                                        
Query: 330  agctcagggaagccttacaactacaattctcctgcctcagccccctgagttctcagaatg 389
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 903  agctcagggaagccttacaactacaattctcctgcctcagcctcctgagttctcagaatg 844

                                                                        
Query: 390  acagacccacacccccagctcagatcctgacactcgatttcattttctttttgtcaaacc 449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843  acagacccacacccccagctcagatcctgacactcgatttcattttctttttgtcaaacc 784

                                                                        
Query: 450  cagatgcatgcgcttccgattgtcacttcgcaggccctaagcatgagagtcagtgctagc 509
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783  cagatgcatgcgcttccgattgtcacttcgcaggccctaagcatgagagtcagtgctagc 724

                                                                        
Query: 510  atgccccacgctctggtcacacaaagcatcatggccctttaaggatgcagtctgagccct 569
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723  atgccccacgctctggtcacacaaagcatcatggccctttaaggatgcagtctgagccct 664

                                                                  
Query: 570  gcatccacctgctgagtcagaaggagtcgtctctggagcttctggggctatgtg 623
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663  gcatccacctgctgagtcagaaggagtcgtctctggagcttctggggctatgtg 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)