Query= MSMg01no148_k02.b1 MSMg01no148_k02.b1 CHROMAT_FILE:
MSMg01no148_k02.b1 PHD_FILE: MSMg01no148_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:35 2005
(660 letters)
>mm_chr8_15141858_15142918
Length = 1061
Score = 1236 bits (639), Expect = 0.0
Identities = 651/655 (99%)
Strand = Plus / Minus
Query: 4 ggaattccattcattctccattgtctctagaatgcccatctctggcttctcgtcacctct 63
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1053 ggaattccattcattctccattgtctctagaatgcccatctctggcttctcatcacctct 994
Query: 64 ccttcctccaatcatttgcactcatattttgtgtatctgtttaacgtgactgtgcagtac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 ccttcctccaatcatttgcactcatattttgtgtatctgtttaacgtgactgtgcagtac 934
Query: 124 tggttccatacctttaaatttccatatgaatgggatttttgatccctccaagggatgttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 tggttccatacctttaaatttccatatgaatgggatttttgatccctccaagggatgttt 874
Query: 184 actcttaaccatatatgtattgtgggtcttctgataaaacgtcagtgaaaataacccagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 actcttaaccatatatgtattgtgggtcttctgataaaacgtcagtgaaaataacccagg 814
Query: 244 gtacccatccaaagcattccctgttgaaaatcatctccagagagcacagggaatgaccac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gtacccatccaaagcattccctgttgaaaatcatctccagagagcacagggaatgaccac 754
Query: 304 caccctatccattggctacttaggacacacccctccttcccccatcatcatggtggttca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 caccctatccattggctacttaggacacacccctccttcccccatcatcatggtggttca 694
Query: 364 gctcacagccctcctccccatcctcctcctggtggttcagctcacacccctcctccccac 423
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 693 actcacagccctcctccccaccctcctcctggtggttcagctcacacccctcctccccac 634
Query: 424 cctcctcctggtggttcagctcacagccctcctccccatcctcttcctggtggttcagct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cctcctcctggtggttcagctcacagccctcctccccatcctcttcctggtggttcagct 574
Query: 484 cactcccctcctccccatcctcctcctggtggttcagctcacagccctcctccccatcct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 cactcccctcctccccatcctcctcctggtggttcagctcacagccctcctccccatcct 514
Query: 544 cctcctggtggttcagctcactcccctcctccccatcctcctcctggtagttcagctcac 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 513 cctcctggtggttcagctcactcccctcctccccatcctcctcctggtagttcaactcac 454
Query: 604 tcccctcctccccatcctcctcctggtggttcagctcactcccctcctccccatc 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tcccctcctccccatcctcctcctggtggttcagctcactcccctcctccccatc 399
Score = 199 bits (103), Expect = 5e-55
Identities = 139/153 (90%), Gaps = 5/153 (3%)
Strand = Plus / Minus
Query: 333 cccctccttccccca---tcatcatggtggttcagctcacagccctcctccccatcctcc 389
|||||||| ||||| || || |||||||||||||||||||| |||||||||||||||
Sbjct: 335 cccctcct--ccccatcctcctcctggtggttcagctcacagccgtcctccccatcctcc 278
Query: 390 tcctggtggttcagctcacacccctcctccccaccctcctcctggtggttcagctcacag 449
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 277 tcctggtggttcagctcactcccctcctccccatcctcctcctggtggttcagctcactc 218
Query: 450 ccctcctccccatcctcttcctggtggttcagc 482
|||||||||||||| || |||||||||||||||
Sbjct: 217 ccctcctccccatcatcctcctggtggttcagc 185
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 149
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 3
Length of query: 660
Length of database: 1061
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1051
Effective search space: 683150
Effective search space used: 683150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_k02.g1 MSMg01no148_k02.g1 CHROMAT_FILE:
MSMg01no148_k02.g1 PHD_FILE: MSMg01no148_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:35 2005
(598 letters)
>mm_chr8_15087094_15088092
Length = 999
Score = 1081 bits (559), Expect = 0.0
Identities = 589/599 (98%), Gaps = 1/599 (0%)
Strand = Plus / Plus
Query: 1 acaccccataacaaaggccacggcgagaaggtgcagcttgcttcgcaaatgcctt-gtgt 59
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||
Sbjct: 201 acaccccataacaaaggccacggtgagaaggtgcagcttgcttcgtaaatgcctttgtgt 260
Query: 60 ggcgaaacctgtagttccatgaagcagcggagcctaataaaacccaagggcagggagttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ggcgaaacctgtagttccatgaagcagcggagcctaataaaacccaagggcagggagctt 320
Query: 120 ccagcttttgccttctggctaaaggagccgccgttcagtatatgggcatagatacatctg 179
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagctattgccttctggttaaaggagccgccgttcagtatatgggcatagatacatctg 380
Query: 180 ggaagtgtattgagtaaagaatactgttgagtcaaaaaataatgttgagtaaaggaaaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaagtgtattgagtaaagaatactgttgagtcaaaaaataatgttgagtaaaggaaaca 440
Query: 240 tttccacagtcataacagagatgacgtcacagtgaggtgctgcctagggcggtcaggtat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttccacagtcataacagagatgacgtcacagtgaggtgctgcctagggcggtcaggtat 500
Query: 300 cccctgccccttcccttcaccccctttccagctgtcttcaccctccctcatggtcgctat 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccctgccccttccctgcaccccctttccagctgtcttcaccctccctcatggtcgctat 560
Query: 360 gagagcatttgaaaggctggtatctgttcgtgctgctgacctcagaaggtggagggtgag 419
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 gagagcatttgaaaggctggtatctgttcatgctgctgacctcagaaggtggagggtgag 620
Query: 420 accctaacatagaggacttgggatcttggtataggctgatatccagcctcatggggcggc 479
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 accctaacatagaggacttgggatcttggtataggttgatatccagcctcatggggcggc 680
Query: 480 taacactggtttgaggctttgcttgctgagatgagcgattccaatggtctgcagtcatgc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taacactggtttgaggctttgcttgctgagatgagcgattccaatggtctgcagtcatgc 740
Query: 540 tggccgtgtgtagggggagaggattggagagtaagtttgcattctggttttattctgtt 598
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggctgtgtgtagggggagaggattggagagtaagtttgcattctggttttattctgtt 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 999
Length adjustment: 10
Effective length of query: 588
Effective length of database: 989
Effective search space: 581532
Effective search space used: 581532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
