BAC Information

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BAC

Clone NameMSMg01-149A23
Chromosome8 (Build37)
Map Location 41,980,149 - 42,121,387
singlet/doubletdoublet
Overlap geneSlc7a2, Pdgfrl, Mtus1
Upstream geneLOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077
Downstream geneFgl1, Pcm1, Asah1, Frg1, LOC100039376, Gm1815, LOC671994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149A23.T7 (MSMg01no149_a23.b1)MSMg01-149A23.TJ (MSMg01no149_a23.g1)
ACCAG351885AG351886
length750697
length of high quality
(start - end)
278 (51 - 328)243 (83 - 325)
definitionCHROMAT_FILE: MSMg01no149_a23.b1 PHD_FILE: MSMg01no149_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:11 2005CHROMAT_FILE: MSMg01no149_a23.g1 PHD_FILE: MSMg01no149_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,121,112 - 42,121,387)(41,980,149 - 41,980,391)
sequence
AACCAATCTAAATTTGCGGCGCTAAACGACTCCTATATTTCGAGAATCCG
CGGAATTCACCGCACGTTACTGAAATCTATTCAATTACAGTAAAATTCAT
CAAACTACATTCTTATATTTGGAGGTTACTTCGGAGACTCCTTTTAGAAT
TGCTCTAGGCCTGAAAACCAGACAGTGTAAGAAGTGACACACTTCCTCCC
GAGGCAGAATTGTGCTGTCTGTGGCTCTGAAGCCAGGATGGGCGGCTCTG
CTTTTTCCTTAGCTCCCTTCCTATGGGTGCCGGCCTCAGGCTGAAAGCAA
AGGAAACAGGGTGGGGTGGGGTGGGGGTGTTTTTCACCTACCATAACTCC
ACCATCCTTTTCCCTCTTTTCCTCCCTCTTCTATATTACCCATTAGCAAC
TAATCCCCCTTTTATTTGATCATCCCCCCCCTCTGTTTTCCCTCTAAATC
CGAATCCACCCCCCTCACCCCTTTTTATCCCCTTCGTTTACCCCTTTCCT
CATAAATCCCCTCCCGAACCCACAGATACCTCCCATACCCCTATATCAGC
TATCTCTTCCATCCCTTTTATATCCCATCCATCCTATTACCGTTTCTCAT
TCCTCTTTATCTCTTACCTTTCAGATCCCCCTACCTCCTTTTTTCCTTTT
TATATCTCTATTTTTCCTACCCATTTATTATTACTCCATATTCCATTATC
TCTCTTTCCCTATTATTTCAATACTATCCCCTCTTCCTACCCCCTAAATA

NNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGGACCCGGT
GAACTATAGAAGGANATGCGAAAATCTTGNCAATTCCTTTCCCACCACAG
TTTGATGGGAGGAATTTTTGCCTAGCACTGAAACAAAAGTGGTCAAGTTT
TAGCAGCCAGTTAAGTTAAGTAACTTGGGGGAAGTGTGGCATTTGAAAAG
GGGTGTTTTGCTTCTGGGAAGAATGAAGAGAGGAGACCAGAGTGTCCTGA
AGCATTTCTCAGTTCTCTGCCTTCAGACAAAAGACCTCTGCTGTTCTCCA
GCGCCCACCCTAGTCCGGGCCTTTATAATCATTATCTGGAATCCAGAATT
TGGTGACTGACCCAGAAATAAATAAAGCAGTTTGATTCCTGACCAGTGGC
TGCTTCAAACGGTGCTAAGTGCACGGGTTCCTTCAGATCATCTGAATTCT
CTTGGCATCCTAGAATTGACATTAAATGGCATTAACTGACATTAATAAAT
GTTGAATTAAGGTCATATGATTTGCTTTTAAAACAATCATGGCCACTTTT
TACAGTTTCCTCAAGAAGGAATACTAAATGACACCCCTCCCCCCATGTCT
TGCTTTATTTAACTGTTTTGATTTACTTTGGTTCTCTTTGATTTGAGTCA
GCACCTCCCCATGTAGCCCAGGTTGGCCTAGGACTCATTGTGTGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_a23.b1 MSMg01no149_a23.b1 CHROMAT_FILE:
MSMg01no149_a23.b1 PHD_FILE: MSMg01no149_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:11 2005
         (278 letters)



>mm_chr8_42120910_42121587
          Length = 678

 Score =  518 bits (268), Expect = e-151
 Identities = 274/276 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcaccgcacgttactgaaatctattcaattacagtaaaattcatcaaactacattc 62
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaattcaccgcacgtgaatgaaatctattcaattacagtaaaattcatcaaactacattc 419

                                                                       
Query: 63  ttatatttggaggttacttcggagactccttttagaattgctctaggcctgaaaaccaga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttatatttggaggttacttcggagactccttttagaattgctctaggcctgaaaaccaga 359

                                                                       
Query: 123 cagtgtaagaagtgacacacttcctcccgaggcagaattgtgctgtctgtggctctgaag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cagtgtaagaagtgacacacttcctcccgaggcagaattgtgctgtctgtggctctgaag 299

                                                                       
Query: 183 ccaggatgggcggctctgctttttccttagctcccttcctatgggtgccggcctcaggct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccaggatgggcggctctgctttttccttagctcccttcctatgggtgccggcctcaggct 239

                                               
Query: 243 gaaagcaaaggaaacagggtggggtggggtgggggt 278
           ||||||||||||||||||||||||||||||||||||
Sbjct: 238 gaaagcaaaggaaacagggtggggtggggtgggggt 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no149_a23.g1 MSMg01no149_a23.g1 CHROMAT_FILE:
MSMg01no149_a23.g1 PHD_FILE: MSMg01no149_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:11 2005
         (243 letters)



>mm_chr8_41979949_41980591
          Length = 643

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcctttcccaccacagtttgatgggaggaatttttgcctagcactgaaacaaaagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcctttcccaccacagtttgatgggaggaatttttgcctagcactgaaacaaaagtgg 260

                                                                       
Query: 61  tcaagttttagcagccagttaagttaagtaacttgggggaagtgtggcatttgaaaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaagttttagcagccagttaagttaagtaacttgggggaagtgtggcatttgaaaaggg 320

                                                                       
Query: 121 gtgttttgcttctgggaagaatgaagagaggagaccagagtgtcctgaagcatttctcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttttgcttctgggaagaatgaagagaggagaccagagtgtcctgaagcatttctcag 380

                                                                       
Query: 181 ttctctgccttcagacaaaagacctctgctgttctccagcgcccaccctagtccgggcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctctgccttcagacaaaagacctctgctgttctccagcgcccaccctagtccgggcct 440

              
Query: 241 tta 243
           |||
Sbjct: 441 tta 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)