BAC Information

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BAC

Clone NameMSMg01-149C22
Chromosome8 (Build37)
Map Location 42,629,470 - 42,629,983
singlet/doubletsinglet
Overlap genenone
Upstream geneVps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1, Pcm1, Asah1, Frg1
Downstream geneLOC100039376, Gm1815, LOC671994, Zfp353, EG620772, LOC628212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149C22.T7 (MSMg01no149_c22.b1)MSMg01-149C22.TJ (MSMg01no149_c22.g1)
ACCAG351972AG351973
length697696
length of high quality
(start - end)		549 (71 - 619)514 (76 - 589)
definitionCHROMAT_FILE: MSMg01no149_c22.b1 PHD_FILE: MSMg01no149_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:21 2005CHROMAT_FILE: MSMg01no149_c22.g1 PHD_FILE: MSMg01no149_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAGACCGCGGA
ATTCTAAAAAAATCCCAAATACATGCAACCTTCAAAAACAGAATATAAGA
AATAGAAGAGAGAATATCAGATGCAGAAGATACCATAGGAAACATTGACA
CAGCTGTCAAAGAAAATGCAAAATGCAAAAAGCTCCTAACCCAAAACATC
CAGGAAATACAGGACACAATGAGAAGACCAAACCTAAAGATAATAGGTAT
ATATAGAAGAGAGCAAAGATTCCCAACTTAAAGGACCAGTAAATATCTTC
AACAAAATTATAGAAGAAAACTTCCCTAACCTAAAGAAAGAGATGCCCAA
AAACATGCAAGAAGCCTACAGAACTCCAGATAGATTGCACCAAATGCACA
AAACAAAGAAAGATATTAAAAGAAGTAAGGGGAAAAGGTCAAGTAACATA
TAAAGGCAGACCTATCAGAATTACACCAGATTTCTCACCAGAGACTGTAA
AAGCCAGAAGATCCTGGAAAGATGTCGTGTAGGCCCGAATAGACCGCAAA
TGCCATCCCAGGCTACTGTAACCAGCAAAACTCTCAACTACCATAGGAGA
GACCAAGATATTCCATGACAAAAAACAATTTACACAATATCTTTGCACAA
ATTCAGCCCTTCCAAGGATAATAAATGGAAATTTTTCACACAAAGAC

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCATTTGCATGAAGAGACATTCCA
AGAGTTCCAGGTGCTCGATGGACAGGTTCTTTATCAGGAGAAAGGAAGCT
GAACCTGTAATCTCACCAAGGCTACAGGACATTCTTCAAGGAAAGGATGG
GGGGCTCCGGCTCCCCAGATCAGGCAGAGAAAAGGAAGCCCTGCTAAGAA
AATGGAGTCCTCCATCTTGCACCGACCTAAGAGAGCTGTCCAGACATAGA
AGACTGACCTTAAACAGCAGGAAGCAACAAGCTTTCTAGGTATGTGCTCA
AGTAAGTGCTTGATGATGTGTAACTTATGCATCAAACAATGCTAACTAAC
CCTAGCTCAACCCTGGGGTTCAAACAACAGAGTTTTCCTTCTTGCTCATC
TATAATAGCCCTACCTCCCACACACCAATCCAAGTGCTATGAGGTTGACA
AGGTTTTTCAAAGTGTACTGGATGAGAGAAATAAAGGACAAACAGTATTT
AAGTTATCTGCACCAGACCTGCCCAATCTGTTGGAATAAAGACAATGCAG
ACTACTGACCATACCTGGGCCTAAACCAATACAAGCTTATGAGTTAGACA
CCCATTGGTACCAGGTTCTGAATGCAACTCATCACCTATTTAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_c22.g1 MSMg01no149_c22.g1 CHROMAT_FILE:
MSMg01no149_c22.g1 PHD_FILE: MSMg01no149_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:21 2005
         (514 letters)



>mm_chr8_42629270_42630183
          Length = 914

 Score =  994 bits (514), Expect = 0.0
 Identities = 514/514 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcatttgcatgaagagacattccaagagttccaggtgctcgatggacaggttctttatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcatttgcatgaagagacattccaagagttccaggtgctcgatggacaggttctttatc 260

                                                                       
Query: 61  aggagaaaggaagctgaacctgtaatctcaccaaggctacaggacattcttcaaggaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagaaaggaagctgaacctgtaatctcaccaaggctacaggacattcttcaaggaaag 320

                                                                       
Query: 121 gatggggggctccggctccccagatcaggcagagaaaaggaagccctgctaagaaaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatggggggctccggctccccagatcaggcagagaaaaggaagccctgctaagaaaatgg 380

                                                                       
Query: 181 agtcctccatcttgcaccgacctaagagagctgtccagacatagaagactgaccttaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcctccatcttgcaccgacctaagagagctgtccagacatagaagactgaccttaaac 440

                                                                       
Query: 241 agcaggaagcaacaagctttctaggtatgtgctcaagtaagtgcttgatgatgtgtaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaggaagcaacaagctttctaggtatgtgctcaagtaagtgcttgatgatgtgtaact 500

                                                                       
Query: 301 tatgcatcaaacaatgctaactaaccctagctcaaccctggggttcaaacaacagagttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgcatcaaacaatgctaactaaccctagctcaaccctggggttcaaacaacagagttt 560

                                                                       
Query: 361 tccttcttgctcatctataatagccctacctcccacacaccaatccaagtgctatgaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccttcttgctcatctataatagccctacctcccacacaccaatccaagtgctatgaggt 620

                                                                       
Query: 421 tgacaaggtttttcaaagtgtactggatgagagaaataaaggacaaacagtatttaagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgacaaggtttttcaaagtgtactggatgagagaaataaaggacaaacagtatttaagtt 680

                                             
Query: 481 atctgcaccagacctgcccaatctgttggaataa 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 681 atctgcaccagacctgcccaatctgttggaataa 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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