BAC Information

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BAC

Clone NameMSMg01-149H04
Chromosome8 (Build37)
Map Location 113,892,486 - 113,994,918
singlet/doubletdoublet
Overlap geneFa2h, Wdr59
Upstream geneHydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl
Downstream geneZnrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149H04.T7 (MSMg01no149_h04.b1)MSMg01-149H04.TJ (MSMg01no149_h04.g1)
ACCAG352164AG352165
length712715
length of high quality
(start - end)
280 (44 - 323)247 (72 - 318)
definitionCHROMAT_FILE: MSMg01no149_h04.b1 PHD_FILE: MSMg01no149_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:43 2005CHROMAT_FILE: MSMg01no149_h04.g1 PHD_FILE: MSMg01no149_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,994,648 - 113,994,918)(113,892,486 - 113,892,732)
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGC
GGAATTCTTCATCTTCTCATCATGGACATCCAGGACCCAAGGCCCTAACT
AACATCTGTTTGAAAATGTATCATATCTTCATTTAGGAAGCCTTCTTACA
TTTGAATTTCAAGAATAACTGGTCATTTGGTGGCTCACTGAATGATCCCT
GTAACCTGAAGGGGAGACGTTAGAACTGCCATGCTACAAAACTAAAAACA
AACAAAAGTACAGCGACCACTGCTTTGCCCCTGTGCGCTGTCGAGCAGCG
CCTTACAGTTATTCTTTGCTAAATTCAACCAGATCAGTAAATAAACCAAA
ACCCCACAGAAACGAAACCATACTACACTTTTGCGCTTGTCTCATACTAC
ACTTAGAATTTCATCCCTGGCGGCAGCTATAGTCACAGTGACCGTATGTT
GGGGAATCTCCTCCATTGCAGGCTGAGGTACCTGCGCCAGGTTCCACAGT
CTCCTTGTATACCTCCAACACGTAGCAGATGCAAATTCCTGGCATTTTGT
TGCTTGCAAATGTACCGACCTTCTTCCATCAATCAATTGACGGACAATTG
CATAATGCTGCTCAATACCACTGCCTTTCCGCCTTCCAGGAAATGTTTTC
TCAAATTCTTTCGTCTCACTGATCCCTCACCCTTCTGCCCATCGCTCCTT
TCCGCCATTCCA
TCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTAAAAGCCAAAATGACCTGGCACAACT
GTGAGGTTTTTTTTTTCTCTCTCTCTCTTAATTAAATCATTTGCCCTCCT
GGTCTCCCACGGCTCCCTTGGTAGGTCACAGCAGTGTGTGCAGTGGTGGC
CACTCCATGACAGGTTTGTCATGGCACCTGATACTGCCATGGTGCCCAAG
AGGAAGGTTATCTGGGTTGAAGGAGCCAAGGTGGAGTCCAGGAGCCACTC
CCTGGCACTGTTGGGGATAGTGGGAGACAATAAATCACCAGAGTAAAACT
GTAAACGGAAGGGAACAGTGAAAAACTCATCTGAAGGAGGAAGACCCACT
TCTAATCCCAATCTCTGTACGAACATACACTTGGGATCCAGAGCTTTTAA
AGCGGAATATACACCTTTATATTCTGGGTCACCTCTTCTGCATACATCCT
ATACAAAGTCATGGAAGAAGGATACTTTCTCTCTCTCTTTTTCTCTCTCT
CTCTCTCTCCCTCTCTCCCTATCCCTCTTCACACCTTTTCCCTTTTCTTC
GCTAACCAATCTCTTTTTCTATTTCTTACCCTTACCTTCTTTTTTCTACC
TACTCTTTCTTTTCCCCCCTACCTACTTCCCCATTTTTTTTCTCCAATTC
TTTCCTTCCTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_h04.b1 MSMg01no149_h04.b1 CHROMAT_FILE:
MSMg01no149_h04.b1 PHD_FILE: MSMg01no149_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:43 2005
         (280 letters)



>mm_chr8_113994439_113995118
          Length = 680

 Score =  516 bits (267), Expect = e-151
 Identities = 270/271 (99%)
 Strand = Plus / Minus

                                                                       
Query: 10  aattcttcatcttctcatcatggacatccaggacccaaggccctaactaacatctgtttg 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aattcttcatcttctcatcatggacatccaggacccaaggccctaactaacatctgtttg 421

                                                                       
Query: 70  aaaatgtatcatatcttcatttaggaagccttcttacatttgaatttcaagaataactgg 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aaaatgtatcatatcttcatttaggaagccttcttacatttgaatttcaagaataactgg 361

                                                                       
Query: 130 tcatttggtggctcactgaatgatccctgtaacctgaaggggagacgttagaactgccat 189
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ccatttggtggctcactgaatgatccctgtaacctgaaggggagacgttagaactgccat 301

                                                                       
Query: 190 gctacaaaactaaaaacaaacaaaagtacagcgaccactgctttgcccctgtgcgctgtc 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gctacaaaactaaaaacaaacaaaagtacagcgaccactgctttgcccctgtgcgctgtc 241

                                          
Query: 250 gagcagcgccttacagttattctttgctaaa 280
           |||||||||||||||||||||||||||||||
Sbjct: 240 gagcagcgccttacagttattctttgctaaa 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no149_h04.g1 MSMg01no149_h04.g1 CHROMAT_FILE:
MSMg01no149_h04.g1 PHD_FILE: MSMg01no149_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:43 2005
         (247 letters)



>mm_chr8_113892286_113892932
          Length = 647

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaaaagccaaaatgacctggcacaactgtgaggttttttttttctctctctctcttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaaaagccaaaatgacctggcacaactgtgaggttttttttttctctctctctcttaa 260

                                                                       
Query: 61  ttaaatcatttgccctcctggtctcccacggctcccttggtaggtcacagcagtgtgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaatcatttgccctcctggtctcccacggctcccttggtaggtcacagcagtgtgtgc 320

                                                                       
Query: 121 agtggtggccactccatgacaggtttgtcatggcacctgatactgccatggtgcccaaga 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 agtggtggccactccatgacaggtttgtcatggcacctggtactgccatggtgcccaaga 380

                                                                       
Query: 181 ggaaggttatctgggttgaaggagccaaggtggagtccaggagccactccctggcactgt 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 ggaaggttatctgggttgaaggagccaaggtggagcccaggagccactccctggcactgt 440

                  
Query: 241 tggggat 247
           |||||||
Sbjct: 441 tggggat 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)