NTTCATAATTTGCGGCGCTAAACGACTCCTATTTCAAGAAATCCGCGGAA
TTCTAAGAATTTAAATAATGATCTGAAAAAGATTAACAGGCATATCCCTA
AATTACTTGTATTCCCCTGTTATTAATATAATTACTTATAAAAGCATGAA
AAAGAAACTTGGATGTAGTTTCTAAAGAAAATTCATTCTATCAATTAAGG
ACACTTGAAAGCCAAGGCTAATGAGATGTTGTGAAGTCTGGGGTTGTAAA
GGCCACTTATAGAACACATTTCGTATGGACTTATAACTCTTCAAAGTCAG
GGCTGGCCCTAGCAGCATTCATAAGCACTTATTCTTTCCCATAAGTCAGA
CACTGCTGCCTCTCTGTCAAGGAGAGTACTAAAGGGCATTTTTGTTCCCC
TCTGAATTTGATGGGAAGTTAACACAGATTGACGATAGGGCATCTGAAAA
TGCTAGTCTCTTTTATTTTCAATTTCACTGGGTGGAAATTGCCCATATTT
TGTCTGTTTGGTTCATGTTCAATGGCACGTTGAGTATCTGACAAAATCTT
CCCAATGCTTAAATGTTTAGCAAATAAAGAAAGAATTCACCATTTTTTTT
AAAAAATCATGAAAAATTTTCTAGGAATATATCTCTCAAATCATTGTTAT
AAAACAGTTTAGCAGACCTAGCAATAATCAATTACACCT

NNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCAT
GAGATATGCTTTTAAATCTAGGTCTACCTTTTCAGGTGTGTTAGGGTGTC
CTGGACTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCC
TGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATC
TCTGGAGTTAGTTGTTATAGTGTCTTTGTTAAGAGATTGTTCCTCTGTTG
ATTTTGTTACCCTCAATCAGCAGGCGTGGGAGACAAGCTCTCTCCTCTGA
GTTTCAGTGGTCAGAGCACTCTCTGCAGGCAAGCTCTCCTCTTTCGGGGA
AGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGG
CCCAAAACAGGATCTTTCGCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTG
GCCGGTTGTCTGGAGTCAAAGATGTCGCCGCCTCAGAAGCTCTGTGGCTC
TCGCCAGGAAGGTGGCTGGTTGTCTGGAGCCCGAAATGGCGCCGCCCCAG
AAGCTCTGTGACTCTCGCCCATACCAGAAACGGCTGGCCTCTGTATTCCA
CACGGTCACCCGTGCGGCCTGTCCTCCGCGGAGCCCG

Query= MSMg01no149_k16.b1 MSMg01no149_k16.b1 CHROMAT_FILE:
MSMg01no149_k16.b1 PHD_FILE: MSMg01no149_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:01 2005
         (578 letters)



>mm_chr8_99138633_99139611
          Length = 979

 Score = 1089 bits (563), Expect = 0.0
 Identities = 575/579 (99%), Gaps = 1/579 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgaaaaag-attaacaggcatatccctaaattacttgtattcccctgttattaatat 59
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 atctgaaaaagaattaacaggcatatccctaaattacttgtattcccctgttattaatat 720

                                                                       
Query: 60  aattacttataaaagcatgaaaaagaaacttggatgtagtttctaaagaaaattcattct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 aattacttataaaagcatgaaaaagaaacttggatgtagtttctaaagaaaattcattct 660

                                                                       
Query: 120 atcaattaaggacacttgaaagccaaggctaatgagatgttgtgaagtctggggttgtaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 atcaattaaggacacttgaaagccaaggctaatgagatgttgtgaagtctggggttgtaa 600

                                                                       
Query: 180 aggccacttatagaacacatttcgtatggacttataactcttcaaagtcagggctggccc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aggccacttatagaacacatttcgtatggacttataactcttcaaagtcagggctggccc 540

                                                                       
Query: 240 tagcagcattcataagcacttattctttcccataagtcagacactgctgcctctctgtca 299
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tagcagcattcagaagcacttattctttcccataagtcagacactgctgcctctctgtca 480

                                                                       
Query: 300 aggagagtactaaagggcatttttgttcccctctgaatttgatgggaagttaacacagat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aggagagtactaaagggcatttttgttcccctctgaatttgatgggaagttaacacagat 420

                                                                       
Query: 360 tgacgatagggcatctgaaaatgctagtctcttttattttcaatttcactgggtggaaat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgacgatagggcatctgaaaatgctagtctcttttattttcaatttcactgggtggaaat 360

                                                                       
Query: 420 tgcccatattttgtctgtttggttcatgttcaatggcacgttgagtatctgacaaaatct 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgcccatattttgtctgtttggttcatgttcaatggcacgttgagtatctgacaaaatct 300

                                                                       
Query: 480 tcccaatgcttaaatgtttagcaaataaagaaagaattcaccattttttttaaaaaatca 539
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 299 tcccaatgcttaaatgtttagcaaataaagaaagaattcaccattttttaaaaaaaatca 240

                                                  
Query: 540 tgaaaaattttctaggaatatatctctcaaatcattgtt 578
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tgaaaaattttctaggaatatatctctcaaatcattgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 979
Length adjustment: 10
Effective length of query: 568
Effective length of database: 969
Effective search space:   550392
Effective search space used:   550392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)