BAC Information

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BAC

Clone NameMSMg01-149K17
Chromosome8 (Build37)
Map Location 86,452,438 - 86,453,021
singlet/doubletsinglet
Overlap geneLphn1
Upstream geneRnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857
Downstream geneAsf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149K17.T7 (MSMg01no149_k17.b1)MSMg01-149K17.TJ (MSMg01no149_k17.g1)
ACCAG352324AG352325
length714708
length of high quality
(start - end)
426 (75 - 500)584 (74 - 657)
definitionCHROMAT_FILE: MSMg01no149_k17.b1 PHD_FILE: MSMg01no149_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:01 2005CHROMAT_FILE: MSMg01no149_k17.g1 PHD_FILE: MSMg01no149_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGAGCGCCGC
GGAATTCAGTCTCAGTATCTACATAAAAAGCTGGATGTGGATCTGGAGAG
ATGGCTCAGCACTGGCTGCTCTTGAAGATGACCCAGACTCTGTTTCCAGA
ACCCACATCTCAGCTCCACAGCTGTCTGTAGCTCCAGTTCCAGGGATCCA
ATGCCTTCTTTTGGTCTCTGAGGAATTTTTTTTTTTTTTTTTGAGACTGG
GTTGTTTGTTTTGAGACAGGGTTTCTCTGTATAGCTCTGGCTGTCTTGGA
ACTCAATCTGTAGACCAAAGTGGTCTTGAACTTGAATTCACCTGCTGGGA
TTAAAGGTGTGTGTCACCATGCCTGGCTAATGAATCTTGAAGTCGTCGTC
ATCATCATCATCATCTGGGCGCCGCGGTGTACTCACACACACACACACAC
ACACACACACACACACACACACACACATACACACACACAAAAATAAATGT
ATGTGGGGCTGTAAAGATATGTCTGTGATTATAAGAGAGAACATTTTGAG
AACGTGAGTTTAATCTCCGCGTATTCATCACCTTCCTACAGTGTGTGAAA
CTACTTTTCGAGAAACCTCTGTGTTTTTGTGAAACAGAAACATGTGCTCA
CGGGCACACACGTGCGATTACACCCACTCATACACACATACATACACACA
CACGCGAAAAATTT
CCGATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGCTCACCCCCTCTCTCCTCGCCAG
CACTAACCTTTTCTTCCCAGGTGGTCTCCAGAGCGTCTCCCTTGGAGCCA
GGACTTTGTGGATATACACACACCCCTCCTTGTCTCTCTTCCCTCTGCAC
AGCTCCCTCACCCCCAATGTCCCGGGAGTCCTGTTGTTCTCCATGCCCCC
ACTCCACCCTGAGCCACCAGAGACCCTGCCGGCTGGGGCAGCACTGGACT
CCTCCCTAGGAGCTGCTTCCCTCCGTCCTTTCCTCAGCTACCTACTGAGG
CTGCCAGCTGAGAGGAGCCCAGACAGCATCAGGGACCCGAGGAGAAGGAT
AGACAGCCCTAAGCCTCCCTGCCAGAGTGGGTGTGGAAACATCACTCTAC
CTTGCAGCTTTTGGAGGAGGAAGAAAGTGAAGTTTTTGGTTTTGTTTTAA
GAGAAAAGAAAGTCTACCCCTGCATGGTTGGTGAAGGATGGGATCCCGGC
CCCTAGTTTTTCCATAGAGGCAGAGAAGAGAGGCCAGGGTGCTGATACCT
AAACCTTGAGGCTAGGTGGCATCGCAGCAGAGGACCCCACTCCCCACCCC
CTCATACCCAATCTGGGAGAGCTCCGGCCAAATCCTTTATCCCCAGCCTG
TAGGGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_k17.g1 MSMg01no149_k17.g1 CHROMAT_FILE:
MSMg01no149_k17.g1 PHD_FILE: MSMg01no149_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:01 2005
         (584 letters)



>mm_chr8_86452238_86453221
          Length = 984

 Score = 1129 bits (584), Expect = 0.0
 Identities = 584/584 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgctcaccccctctctcctcgccagcactaaccttttcttcccaggtggtctccagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgctcaccccctctctcctcgccagcactaaccttttcttcccaggtggtctccagag 260

                                                                       
Query: 61  cgtctcccttggagccaggactttgtggatatacacacacccctccttgtctctcttccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtctcccttggagccaggactttgtggatatacacacacccctccttgtctctcttccc 320

                                                                       
Query: 121 tctgcacagctccctcacccccaatgtcccgggagtcctgttgttctccatgcccccact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgcacagctccctcacccccaatgtcccgggagtcctgttgttctccatgcccccact 380

                                                                       
Query: 181 ccaccctgagccaccagagaccctgccggctggggcagcactggactcctccctaggagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaccctgagccaccagagaccctgccggctggggcagcactggactcctccctaggagc 440

                                                                       
Query: 241 tgcttccctccgtcctttcctcagctacctactgaggctgccagctgagaggagcccaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcttccctccgtcctttcctcagctacctactgaggctgccagctgagaggagcccaga 500

                                                                       
Query: 301 cagcatcagggacccgaggagaaggatagacagccctaagcctccctgccagagtgggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcatcagggacccgaggagaaggatagacagccctaagcctccctgccagagtgggtg 560

                                                                       
Query: 361 tggaaacatcactctaccttgcagcttttggaggaggaagaaagtgaagtttttggtttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggaaacatcactctaccttgcagcttttggaggaggaagaaagtgaagtttttggtttt 620

                                                                       
Query: 421 gttttaagagaaaagaaagtctacccctgcatggttggtgaaggatgggatcccggcccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttttaagagaaaagaaagtctacccctgcatggttggtgaaggatgggatcccggcccc 680

                                                                       
Query: 481 tagtttttccatagaggcagagaagagaggccagggtgctgatacctaaaccttgaggct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagtttttccatagaggcagagaagagaggccagggtgctgatacctaaaccttgaggct 740

                                                       
Query: 541 aggtggcatcgcagcagaggaccccactccccaccccctcatac 584
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggtggcatcgcagcagaggaccccactccccaccccctcatac 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)