Query= MSMg01no149_m23.b1 MSMg01no149_m23.b1 CHROMAT_FILE:
MSMg01no149_m23.b1 PHD_FILE: MSMg01no149_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:12 2005
(667 letters)
>mm_chr8_75265240_75266307
Length = 1068
Score = 1259 bits (651), Expect = 0.0
Identities = 663/667 (99%), Gaps = 1/667 (0%)
Strand = Plus / Plus
Query: 2 ggaattctccttctttgacc-ggtgagcaaggccctctaaggccctctccatctggacac 60
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctccttctttgacaaggtgagcaaggccctctaaggccctctccatctggacac 261
Query: 61 agctgcttcctgccaatgccttgtgtggggccccggaagcagggccactgtggtgcgtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agctgcttcctgccaatgccttgtgtggggccccggaagcagggccactgtggtgcgtgg 321
Query: 121 gggagagcagcgtagaccgcagaggcagcccagacagttcagggtcatgcacatatcctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gggagagcagcgtagaccgcagaggcagcccagacagttcagggtcatgcacatatcctt 381
Query: 181 ccatacagacacatttatgaggcttctgcctggtgcacacatcttttgcagccgtgtctc 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 382 ccatacagacacatttatgaggcttctgcctggtgcacacatcttttgcaaccgtgtctc 441
Query: 241 tagcgtccctatctctttactctcacaggtgcgcagggtgctgaagagccaggaggtata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tagcgtccctatctctttactctcacaggtgcgcagggtgctgaagagccaggaggtata 501
Query: 301 tgagaactttctgcgctgcattgcgctcttcaatcaggagctggtgtccgggtctgagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgagaactttctgcgctgcattgcgctcttcaatcaggagctggtgtccgggtctgagtt 561
Query: 361 gctgcagcttgtcagtccattcctggggtaagtggctcccgactcctaactcctgggctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gctgcagcttgtcagtccattcctggggtaagtggctcccgactcctaactcctgggctt 621
Query: 421 tctcctattccagccagacccagggcaagtgagttgtaaagtttgttcatgtgatttgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tctcctattccagccagacccagggcaagtgagttgtaaagtttgttcatgtgatttgtt 681
Query: 481 gttttaaacattagtttattttctatgtgtacacaggtacagaccagagaacaagttctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gttttaaacattagtttattttctatgtgtacacaggtacagaccagagaacaagttctt 741
Query: 541 ggatgggtataggcttagattattcaaaacctactttaataagagttcttaaatgcttca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ggatgggtataggcttagattattcaaaacctactttaataagagttcttaaatgcttca 801
Query: 601 gtctcccttttagcccaccacccaccagaggtagtagaaaagaaaggttaataaggaaca 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gtctcccttttagcccaccacccaccagaggtagtagaaaagaaaggttaataaggaacg 861
Query: 661 ggagttg 667
|||||||
Sbjct: 862 ggagttg 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1068
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1058
Effective search space: 695106
Effective search space used: 695106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_m23.g1 MSMg01no149_m23.g1 CHROMAT_FILE:
MSMg01no149_m23.g1 PHD_FILE: MSMg01no149_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:12 2005
(606 letters)
>mm_chr8_75382382_75383387
Length = 1006
Score = 1141 bits (590), Expect = 0.0
Identities = 602/606 (99%)
Strand = Plus / Minus
Query: 1 ttccgcaacctctacctgaccttcttggagtatgatggcaacctcctgcggcgggagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ttccgcaacctctacctgaccttcttggagtatgatggcaacctcctgcggcgggagctg 747
Query: 61 tttggctgccccagtgagactgatgtcaacaatgaaaatgtgagtgttccacagatcatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tttggctgccccagtgagactgatgtcaacaatgaaaatgtgagtgttccacagatcatc 687
Query: 121 agggagattggccatactcttatttgtctgtgttgggtccttgttgggtactacatccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agggagattggccatactcttatttgtctgtgttgggtccttgttgggtactacatccag 627
Query: 181 ctcagggaacaacttagctgccatggaatccatgacccagtacatcatctggagactttc 240
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 626 ctcagggaacaacttagctgccatggaatccatgacccagtacatcatttggagacttcc 567
Query: 241 tgtggatcactgttgatatgggaggagatattagctcagctgaatagataagcatgagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgtggatcactgttgatatgggaggagatattagctcagctgaatagataagcatgagtt 507
Query: 301 tacaaacaaaagaaactatccgttatctatgtctgcttcatggccagcaaactcccaagc 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 506 tacaaacaaaagaaactatccgttatctatgtctgcttcatggccagtaaactcccaagc 447
Query: 361 atgtagtggtaaaggcatccacatagaactcatgattaatcttggttggtacctagggtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atgtagtggtaaaggcatccacatagaactcatgattaatcttggttggtacctagggtg 387
Query: 421 acacagaaggagactcccacagggactggcatcttcccagttagtttggacaaggaaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acacagaaggagactcccacagggactggcatcttcccagttagtttggacaaggaaaac 327
Query: 481 attgagtgaatagtttgaagctattggatgttttggttgttactgttttatccagttttt 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 326 attgagtgaatagtttgaagctattgggtgttttggttgttactgttttatccagttttt 267
Query: 541 cttttcaatatgttatagcttatgtttattcattgggtcactttattatggaaaatgttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cttttcaatatgttatagcttatgtttattcattgggtcactttattatggaaaatgttg 207
Query: 601 aagtag 606
||||||
Sbjct: 206 aagtag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
