BAC Information

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BAC

Clone NameMSMg01-150C15
Chromosome8 (Build37)
Map Location 80,353,501 - 80,353,987
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039211, LOC384847, Nr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
Downstream geneEG622803, Ttc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466, Lsm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150C15.T7 (MSMg01no150_c15.b1)MSMg01-150C15.TJ (MSMg01no150_c15.g1)
ACCAG352677AG352678
length731732
length of high quality
(start - end)
460 (39 - 498)509 (77 - 585)
definitionCHROMAT_FILE: MSMg01no150_c15.b1 PHD_FILE: MSMg01no150_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:39 2005CHROMAT_FILE: MSMg01no150_c15.g1 PHD_FILE: MSMg01no150_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCTCACC
TGATTAATACCGAATGGCTGAGAAGCACCTGAAAAAATGTTCAACATCCT
TAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACA
CCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGTCAGCAGATGCTGGCG
TGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGC
TTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGAC
ATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGA
AGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAG
CCTTATTCACAATAGCCAGAAGCTGGAAAGAACACAGATGCCCCTCAACA
GAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTC
AGCTATTAAAAACAATGAATTTATGAAATTCCTAGCCAAATGGATGGACC
TGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACAC
CATATGTACTCACTGATAACTGGATATTAGCCCACCACCTACGACACTCA
AGATACCAGATACAATTTCCCCCCCCCTGACACTCACGCATAATGAACAC
TGAAGTGTGGACCCTATGCCCCTCCCTAGAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGACCACTTCACTCACTAGTAAGT
GGGCCTGTAGATGGAGTGACAGCTTTAGGACCTGGTAGAGTGAGCAGTTC
AGACCCCTCCTCTACAGTGTGGCTATTGTCTCTAGATTTTCTCCATGTGG
CTTAACATTCAACATATTTTACATCGACATTAGAACGAATAAGACTTATG
CCCTATGTTCCTAGATAAACACCAATGCTTTCTAAATGAGCTCAAGGCCA
TGTGTGGTGTTGCCTCGTAGATGCAGGTGGAGAAAAGTCTTGGTGCCCTT
TCCCTTGTTCCTGAGTGTCCCCACTGAGCTTCGTTTGTGCAGCTCTGCAC
TGCCCAGAAGTGGACCCCGGCAGCCTCCATGATTTATGGAAGCATTTAGT
CCCTCAGCCTTTGGGTTTATAATGTCTTGTAAATAAGTAGAAGAAAGCAG
ACCCCGCCTCCATCTCCTAGAGAGGATGGAATGTTTCATTATCATGGCTT
TAATCTCTGCCTATCCTTTACAAAGGTAACATGCAAAACATCTGGCTTGC
TTTGAAGTCAGCTTATTTTACCAAATTAAACTTTCCCAGATTGTGACCCC
CTTCCCCCTTTACTGTGCCCTGCAATACTTGATTAATTCCGGGCCAAGCA
CCCCTGCGTTTATAAACCTGACCACTTACCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_c15.g1 MSMg01no150_c15.g1 CHROMAT_FILE:
MSMg01no150_c15.g1 PHD_FILE: MSMg01no150_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:39 2005
         (509 letters)



>mm_chr8_80353279_80354187
          Length = 909

 Score =  810 bits (419), Expect = 0.0
 Identities = 470/491 (95%), Gaps = 8/491 (1%)
 Strand = Plus / Plus

                                                                       
Query: 23  gtgggcctgtagatggagtgacagctttaggacctggtagagtgagcagttcagacccct 82
           |||||| || ||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 223 gtgggcttgcagatggaatgacagctttaggacctggtagagtaagcagttcagacccct 282

                                                                       
Query: 83  cctctacagtgtggctattgtctctagattttctccatgtggcttaacattcaacatatt 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cctctacagtgtggctattgtctctagattttctccatgtggcttaacattcaacatatt 342

                                                                       
Query: 143 ttacatcgacattagaacgaataagacttatgccctatgttcctagataaacaccaatgc 202
           |||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 343 ttacatcgactttagaacgaataagacttatgccctatgtttctagttaaacaccaatgc 402

                                                                       
Query: 203 tttctaaatgagctcaaggccatgtgtggtgttgcctcgtagatgcaggtggagaaaagt 262
           |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 403 tttctaaatgagctcaaggccatgtgtggtgttgccgcgtagatgcaggtggggaaaagt 462

                                                                       
Query: 263 cttggtgccctttcccttgttcctgagtgtccccactgagcttcgtttgtgcagctctgc 322
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 463 cttggtgccctttcccttgttcctgagtgtctgcactgagcttcgtttgtgcagctctgc 522

                                                                       
Query: 323 actgcccagaagtggaccccg----gcagcctccatgatttatggaagcatttagtccct 378
           ||||||||||||||||    |    |||||||||||||||||||||||||||||||||||
Sbjct: 523 actgcccagaagtgga----gtaaggcagcctccatgatttatggaagcatttagtccct 578

                                                                       
Query: 379 cagcctttgggtttataatgtcttgtaaataagtagaagaaagcagaccccgcctccatc 438
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 579 cagcctttgggtttataatgtcttgtaaataagtagaagaaagcagagcccgcctccatc 638

                                                                       
Query: 439 tcctagagaggatggaatgtttcattatcatggctttaatctctgcctatcctttacaaa 498
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 639 tcctagagaggatggaatgtttcattatcatggctttaatctccgcctatcctttacaaa 698

                      
Query: 499 ggtaacatgca 509
           |||||||||||
Sbjct: 699 ggtaacatgca 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)