BAC Information

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BAC

Clone NameMSMg01-150I16
Chromosome8 (Build37)
Map Location 82,916,920 - 82,917,160
singlet/doubletsinglet
Overlap genenone
Upstream geneSmad1, LOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1, Anapc10, LOC100039439, Hhip, LOC546075
Downstream geneGypa, Frem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150I16.T7 (MSMg01no150_i16.b1)MSMg01-150I16.TJ (MSMg01no150_i16.g1)
ACCAG352952AG352953
length734845
length of high quality
(start - end)
241 (72 - 312)182 (75 - 256)
definitionCHROMAT_FILE: MSMg01no150_i16.b1 PHD_FILE: MSMg01no150_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:07 2005CHROMAT_FILE: MSMg01no150_i16.g1 PHD_FILE: MSMg01no150_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCCACACGGCCGCGGAAT
TCTTTGGTTTGCCATATGCAGCCTGCCTTGCTTTTATTTAAGCTCAATAG
ATTTGATTCATCTCTGAAGTTTATTCCAAGTAGAAATAAAAGGGGAAGAA
GAGCTCTCTTAGACACTTCCCAGCGTTGACTGCAGACTGCTAGTGCCCGA
AAAGAGTCCTGCATTTACATCATTTCCCCTCCCTCTCCTCCTCCAATGCC
TCTTGTCCTTTACAAATTCATGGTTTCTTATTCCTTAGTGATAATGGTTA
CATGCATGATGTCTATAAATTTATAAATACAACCCGCTGAGACCATTTGG
TGCTGTGTTTAGTGCTGATGGGATAAAAATGAGGACTTGCCCACTCCAAG
GCGGAGTTGACCCCCCCCGTTTTTGTTATAGACAGCACCTACAGTACATC
TGGAAGGATCCAGAGCAGGGAGAGGAACTAGTAGACTAGACATGCACAGC
AGACCAAACCAGGCCATGAGAGCAGGCAGCCCCCAGTGACAGCCAAGAGA
CTACACGGAGACTAGAGCGGGAACCCCCACGCCCCGAGAGCCACCCAGAC
ACCGTGTGGCTGACCTCTGCATGAAAGAGCTGAAGGGAACGCGCCCCCCT
AACCCCGGTCTGGATAACCCACGCCAGCGCCCGTACCTATGTCACCCGTA
TCCCCGCCCCAGGTACTGCTTCTTCGCCGTGTTG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTTTATCAGCTTTTGTTGTGCC
AACCTTATCTCTTAATTTAAAACTATTGGTTGGACAAAAGTGGCTCAGCC
AATTACTAGGAGGATTAGAGGTAGGCAGATTTTTAGTTACCCAGTTGTGG
GTTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGTACATNTTTTTTCTTTTTTTTCATTCTTCCTACTCACCCCTTC
CCGCCTACATTTTCTCCCCCCCCACTCTTTTTTTTTCCCTCCTCTCTTTA
CCCACCGCCCCCGCTCCCCAATTTATTTATATCTCTAATAATTCTTGAGG
TCGTTTTTTCTCTTCTTTTTTCCTTCTCTAAAAGGTTTTCCCCCCCCCCC
ACATTCCCCTTTTTTTTTCCCCCCCTCTCCCCTCCCCTATTTTTTTATTC
CCCCCCCTTTTTTCACCCCCCTCTTCTCCCTCCCCCTTTTTTTTTTCTCC
CCCCCCCCCTCTCTTTTCCTCCCCCCTCCCCCCTTCTATTTTCCCTCCTT
CTCTTCTTCCCCCCTCTTATTTCCTTCTTTTTCCCCCCCCACCCTTCCCC
CCTCTTTCTTCTTTTTTTTCTTTTCCTCCCCCCCCCTCTCCCTCCTTTTT
CCTCCTTTTTTCTCCCCCATTTCCCCCCTCCCTCCCCCTCTTCCTTTTTT
TTCCCCCCTTTTTCGCTTTCTTTTTTTCTCCCCCCTACCTTTCTTCTTTT
CCACTTTCCTTTCCTCCCTTCCTTTTTATTCTCCCCCCTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_i16.b1 MSMg01no150_i16.b1 CHROMAT_FILE:
MSMg01no150_i16.b1 PHD_FILE: MSMg01no150_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:07 2005
         (241 letters)



>mm_chr8_82916720_82917360
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgccttgcttttatttaagctcaatagatttgattcatctctgaagtttattccaagt 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 441 cctgccttgcttttatttaagctcaatagacttgattcatctctgaagtttattcaaagt 382

                                                                       
Query: 61  agaaataaaaggggaagaagagctctcttagacacttcccagcgttgactgcagactgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaataaaaggggaagaagagctctcttagacacttcccagcgttgactgcagactgct 322

                                                                       
Query: 121 agtgcccgaaaagagtcctgcatttacatcatttcccctccctctcctcctccaatgcct 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 agtgcccgaaaagagtcctgcatttacatcattttccctccctctcctcctccaatgcct 262

                                                                       
Query: 181 cttgtcctttacaaattcatggtttcttattccttagtgataatggttacatgcatgatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgtcctttacaaattcatggtttcttattccttagtgataatggttacatgcatgatg 202

            
Query: 241 t 241
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)