BAC Information

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BAC

Clone NameMSMg01-150M16
Chromosome8 (Build37)
Map Location 30,034,808 - 30,035,103
singlet/doubletsinglet
Overlap geneUnc5d
Upstream geneEG666422, LOC666430, EG666446, LOC100042598
Downstream geneLOC100041237
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150M16.T7 (MSMg01no150_m16.b1)MSMg01-150M16.TJ (MSMg01no150_m16.g1)
ACCAG353135AG353136
length909781
length of high quality
(start - end)
144 (69 - 212)301 (79 - 379)
definitionCHROMAT_FILE: MSMg01no150_m16.b1 PHD_FILE: MSMg01no150_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:26 2005CHROMAT_FILE: MSMg01no150_m16.g1 PHD_FILE: MSMg01no150_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAACACGGATCCGCGGAAT
TCAATCATAATTATAGCTCAAGTGATCTAACCAAAGTGCCTAGATTTTTC
TACCTGTCTTTCAGCTATGGGATAAATGCTTTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGT
GTGTGTGTGTGTGTGCGTGTTAGGCCCCAAAATATCACTATCCTCAAACT
CTCATTAAAACCCTCCCACCACTTCTTTCCCATTCTAACATAATAGAATA
ACAACTTACCCCCTTTTTTTTTTTTCCCATCCTTCTCCCTTCTACCCACT
AAATATATACACTATACACCAAACCAACACCCCCTTACCACACTTACCAA
ATTCCCCCCATTTATGTATATGGGGGGCGACAACCCCGGTGGTAAAAAAT
ACATACTACCAATCCATCTCCATCACCATACTCCCATCCATAAAAATATT
TAATACCTTCCACCCCTCCCTAAAATCAAACTCTACCCTCTCATATCACC
TAATATCATTTCATTTCCAATACTATCCCCCCTAAATATCACAACTCACT
TAAACATCTACCAATACACCTACCACACAAACAAATTCTCGTTCACTCCA
CTTATCACCCCCCCCTCACACCTAATACTCACCCCCTTTTTATATTCCCT
TTTTCATATTTATCTTATTTCCAACGCACCTTCATCACTCTCTATTCTAC
CTATTATCATTCACCACCCACTACTAACAACATCCACAACAATATTCTTC
TTATTGTTTTTACCATGACAACCACTATAATCACCACGACTATATAACAC
ATTATTAATCTCCACCCGTCTCTCATTGTATCTCATTATTATCTTGCTCC
CCCTCTTAT
NCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCTTTTATATTCAAATATT
AAATATTTCCAGCATCATTCATTGAATAGTCTGGAGTTTTGTATTTTGTT
GCAGTATAGGTTGTTTTTTTTTTCCGTGTAAAAATTTATGTAGCCATCAC
TATATGGGTATATTTTCGATCCTATATTCTGTACCAGTGGCCTATGTATC
TGTTGTTAGGTCAAGAATAGCCCATTTGTCATGATAGCTGTGCTGGATAA
TCTGAGGTCAATTATTATGATAATGATGGAGATCTGTGCTCCTTTACTTT
AGCAATTTTTTCTTTTTTTTTTTTTTGGTTTCTTGTTTCGCTTTCCCTTG
TCCACAAGGTTGTATATCCCCCCTCCCCCACATATGAATTTTTCACATGC
CCCCCTCCCTATTTTTTTCCTCCCCTCTTTCCCCCCCCTTCCCCCCCCCC
TTTCTTTTTCCCCCCCCCCCCTTTTTCACCCCCCCCTCCCTCTTTTTCTC
CTCTTTATTCTCTCCCCATTTTTTTCCCCTTTTCCTCCCCCCCCTCCCCT
CCTTTTCCCTCTTTTCCTTTTTCCCCCACTTTTTACTCTTTTTTCCTTCT
TATTCCCACCTTTTCCCCCCCCCCCCCCCCTTCCTTTCTTCCTCCCCCTT
TCTCCTATTTTTTTCTACCCCCCCCTTTCTTCTCTCTTTCTCCTTTCCCA
CCCCCCCCCTTTTAATAATCCCCCTCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_m16.g1 MSMg01no150_m16.g1 CHROMAT_FILE:
MSMg01no150_m16.g1 PHD_FILE: MSMg01no150_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:26 2005
         (301 letters)



>mm_chr8_30034608_30035306
          Length = 699

 Score =  532 bits (275), Expect = e-155
 Identities = 292/299 (97%), Gaps = 4/299 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattcttttatattcaaatattaaatatttccagcatcattcattgaatagtctggagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cattcttttatattcaaatattaaatatttccagcatcattcattgaatagtctggagtt 437

                                                                       
Query: 61  ttgtattttgttgcagtataggttgttttttttttccgtgtaaaaatttatgtagccatc 120
           |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttgtattttgttgcagtatag---gttttttttttccgtgtaaaaatttatgtagccatc 380

                                                                       
Query: 121 actatatgggtatattttcgatcctatattctgtaccagtggcctatgtatctgttgtta 180
           |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 379 actatatgggtatatttttgatcctatattctgtaccagtgacctatgtatctgttgtta 320

                                                                       
Query: 181 ggtcaagaatagcccatttgtcatgatagctgtgctggataatctgaggtcaattattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggtcaagaatagcccatttgtcatgatagctgtgctggataatctgaggtcaattattat 260

                                                                      
Query: 241 gataatgatggagatctgtgctcctttactttagcaattttttcttt-ttttttttttt 298
           |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 259 gataatgatggagatctgtgctcctttactttagtaattttttctttcttttttttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 699
Length adjustment: 9
Effective length of query: 292
Effective length of database: 690
Effective search space:   201480
Effective search space used:   201480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)