BAC Information

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BAC

Clone NameMSMg01-152E05
Chromosome8 (Build37)
Map Location 29,917,652 - 29,917,860
singlet/doubletsinglet
Overlap geneUnc5d
Upstream geneEG666422, LOC666430, EG666446, LOC100042598
Downstream geneLOC100041237
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152E05.T7 (MSMg01no152_e05.b1)MSMg01-152E05.TJ (MSMg01no152_e05.g1)
ACCAG354197AG354198
length716720
length of high quality
(start - end)
230 (85 - 314)208 (139 - 346)
definitionCHROMAT_FILE: MSMg01no152_e05.b1 PHD_FILE: MSMg01no152_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:19 2005CHROMAT_FILE: MSMg01no152_e05.g1 PHD_FILE: MSMg01no152_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAAATTTGCGGCGCTAAACGACTACCATTTTCCCACTTCCGCGGAATTC
TTGGNCCTTCCCCAAATCATCCTTAGGGGGCGTGGCCTTGGTGGACTTTA
TTGGAGGAAGTTTGTAACTTGGAGGCCATCTTTGAGGTCTTATATATGCT
CAAGCTATGCCCAGTGTGATATACAGTCTCCTTTTGCTGCCTTAGGATCA
AGATATAGACCTCTCAGCTCCTTCTCCAACACCTACATGCTGCCATGTTT
CCCAACATGACAATAATGGACGAAAACTCAGAACCTGTGAGGTATGGACT
AAGCTTGTGAAACTGTTTTTTAGTCACTTAAATGTTTTCCTTTATAAGAG
AGGCCATAGACATGGTGTCTCTTCACAGCAATAAAACCCTAACTCAAATA
CTATGAGAGACATTGACGTGACCATTATCTAGGGGCTGGACCTAATCCCA
TGATTCCTTTGCCTTGGGGTTCACAGCGAAACCCAGTGCCTCATATTATA
AATCCAGCTTTCTGCTCAGCCTTCTCAGGCCTCAGTCATTTCATGCCCTG
CTCCAACTTTCTACATTCTCACTCTTACAATCTCTCACATAAAATATCTT
CTCTAAACCAGATGCTTTTTGTAGAGATACTCTGAACGACTCCTTTACAG
AAACCTCCAATACCACAGCTCTAAGATTAATGGCTGGGTTTTCATTACCG
CCTAAGGTAAGCCTAN
CGATGAAGCGGTAGGCCTGGCGGACGCCCGGCTCACCAACACAGGTGAAC
TATAGAAGGTTTCCCGCCCAACCAGCGTCTGGAAGAAGTGAATGAAATTC
TGAGAATGCTGGCCAGCGAGACCCCCAAACACCATGGTTATTTAAAGAGG
CATGTCAAGCAGGGATTCCTGATGGGACAAGAAGGACAATTCGATCCAAA
AGAGGTATTTCAGGGAACAAGTGTCTAAGCTGTCTAACACACTTTCTTAT
ATTGACACCCTGACAGGTGTTTGGGCATTTGGGAGAAACATTACTTCTAT
CAAAAATGAATACCACCATTAATTATGGGACATTTTTTTTAAAGTTAGAA
AATTAGAAACGTGGTCATAACAAAATTGAGCACTTTAAATGTGAATATTA
TCAGGTAGTCATAATACTATAAATTCCAAATACTAATTTACGTAAGAGTA
AAATACAACTCTATGCTGGTAACATGGAACTGTGTTGCTGAGAGAAATAT
AATGCTAACTCTTCCCCCTCCCTATGAGGACTACATAATTAATAAAAATC
TAATAGCCTCCAAATGCATTATTTTAATATTAACACCAAGCCTTAAACAG
CAAACTCCAAGGAAGAATTTCGAGTGGCAGACATTTTCTCTTCCCCGAAT
AAATTACATTTTTATGTGCTCAGCCCTACTAACGCTAAAACCACGACCCT
CACTACCCGTCTCTACCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_e05.g1 MSMg01no152_e05.g1 CHROMAT_FILE:
MSMg01no152_e05.g1 PHD_FILE: MSMg01no152_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:19 2005
         (208 letters)



>mm_chr8_29917452_29918060
          Length = 609

 Score =  389 bits (201), Expect = e-113
 Identities = 207/209 (99%), Gaps = 1/209 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttaaagaggcatgtcaagcagggattcctgatgggacaagaaggacaattcgatcca 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tatttaaagaggcgtgtcaagcagggattcctgatgggacaagaaggacaattcgatcca 350

                                                                       
Query: 61  aaagaggtatttcagggaacaagtgtctaagctgtctaacacactttcttatattgacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aaagaggtatttcagggaacaagtgtctaagctgtctaacacactttcttatattgacac 290

                                                                       
Query: 121 cctgacaggtgtttgggcatttgggagaaacattacttctatcaaaaatgaataccacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cctgacaggtgtttgggcatttgggagaaacattacttctatcaaaaatgaataccacca 230

                                        
Query: 181 ttaattatgggaca-ttttttttaaagtt 208
           |||||||||||||| ||||||||||||||
Sbjct: 229 ttaattatgggacatttttttttaaagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 609
Length adjustment: 9
Effective length of query: 199
Effective length of database: 600
Effective search space:   119400
Effective search space used:   119400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)