BAC Information

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BAC

Clone NameMSMg01-152G10
Chromosome8 (Build37)
Map Location 70,234,666 - 70,364,638
singlet/doubletdoublet
Overlap genePsd3
Upstream geneBC053440, LOC665453, Nat1, Nat2, LOC100041265, Nat3
Downstream geneSh2d4a, LOC665510, 4732435N03Rik, Ints10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152G10.T7 (MSMg01no152_g10.b1)MSMg01-152G10.TJ (MSMg01no152_g10.g1)
ACCAG354289AG354290
length804727
length of high quality
(start - end)
108 (129 - 236)534 (76 - 609)
definitionCHROMAT_FILE: MSMg01no152_g10.b1 PHD_FILE: MSMg01no152_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:29 2005CHROMAT_FILE: MSMg01no152_g10.g1 PHD_FILE: MSMg01no152_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,364,531 - 70,364,638)(70,234,666 - 70,235,199)
sequence
CCACCACTCCTAAAATACAATTCTTTCTCCCCCTCCCCCCCCCTCCCCCA
CCNATAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCCGGAATCAATTTTCCCAAAGCTTTATGTTGCATATTTAGTCTCC
CTCAGTTCTTTGTAACAACCCTAAAATCTCCACAGCTTAAAGTGTTCACA
TATTCTCTCATTCCATTGCTGGCTTTGGGGACAGCCCTGCTAGAGCTGTT
TCCTGCTCTGAGAGTCATCTCACAGTTATGTCCCATCTGAGGACCATTCC
CTCGCTCACCAGGATTGTTCTTTCGGCAGAGATGATCTTGAGGCTGAGTC
CAGCCTCACAGTACATGCAAGATTTCTGCTGCCTATGGCACAAGACACAT
TGGCTCGTTGTTTACAGATGAAAATGTGGTGTTTCATGCGTGTGTCAATA
ACAACTATCGGAAGAGTAGAAAATTTCCTTGATAATAATACCCTGAAGCA
AGGCATACCTAGCACATACCTGGTATATATAATTTCCTTTATAGTACATT
ACACTACAAACATCCTTTTTCAGACAGAATACACTGTTAGGTGATATATT
AAATGCAGCGTCAATTTCTTGCCGACCAGTACTTTTTTCCCAGAGGAGAA
CCCTTCATACTTCACCGCCACCTTTTCACCCTCTCTATCGCTACAAATCG
CTCCTGGAATACAACATTTTCCCCTGGGTGCCACATCATGCCCTCCTCTT
TTTATTTTCTCCTATCTCCACCCACCCCTTTTTATGCCATGTTAATATTT
CCTT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAGCCATACAGAGAGCTATGAACT
TGGCTTGCTATGAAGAATTGCTTGTCCTTAAAGCAACCTGGGACATAACT
GGAATGCAGAAACATAGGACCGGCCCTGGTGTTGTCAGCAGCAAGTTCAT
ATTCTGCCAAAACAAAAGTGTTCTTTCCGAGGCGTGTGAAAATGACAAGA
GCTGCTCTGAAACCAAAGGAAGCTTCCAGATGATGACCTGCCCTGGAGCA
GGTGAGATTAGTACTCTGGAGCTGATAGAGGCGACCACATGGTTCATCCC
CAGTGAGAACACGGCCTGGATTAGCACCTTCCTCTTGTCACTGACCATTC
AGGGCTTCTGTGGACTTGCAGGCCTTCTCTTCTCACTTGTTAATGGGATT
TTCTGTCACACATGGACCTGTCCATCTATCAAGGATTGGTACTAAGCTTT
CTGAGTGCACGGACTTCTTGGATGCTATCATTGCATCCAATGCTATGATA
AAGTCTCTCTGAGTCCTTCAGCTGTGTATCAAGAATCTGGAAAATATTCT
AGGATCTGGGTAGATCTGTTAGAAAAATATACAAACTGGCCAATAGTTGC
CTACATTCTATTCAGGAAAGTAGTGAGTGATTAAAGGGGCGTCGCTAATA
AGGAAAAGATACTGTACAACAGCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_g10.b1 MSMg01no152_g10.b1 CHROMAT_FILE:
MSMg01no152_g10.b1 PHD_FILE: MSMg01no152_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:29 2005
         (108 letters)



>mm_chr8_70364331_70364838
          Length = 508

 Score =  178 bits (92), Expect = 9e-50
 Identities = 104/108 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatgttgcatatttagtctccctcagttctttgtaacaaccctaaaatctccacagctt 60
           |||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||
Sbjct: 308 ttatgttgcatatttagtctccctcctttctttgtaagaaccctaaaatctccacagctt 249

                                                           
Query: 61  aaagtgttcacatattctctcattccattgctggctttggggacagcc 108
           |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 248 aaagtgttcacatattctctcattccgttgctggctttggggacagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 508
Length adjustment: 8
Effective length of query: 100
Effective length of database: 500
Effective search space:    50000
Effective search space used:    50000
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no152_g10.g1 MSMg01no152_g10.g1 CHROMAT_FILE:
MSMg01no152_g10.g1 PHD_FILE: MSMg01no152_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:29 2005
         (534 letters)



>mm_chr8_70234466_70235399
          Length = 934

 Score = 1017 bits (526), Expect = 0.0
 Identities = 532/534 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagccatacagagagctatgaacttggcttgctatgaagaattgcttgtccttaaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagccatacagagagctatgaacttggcttgctatgaagaattgcttgtccttaaagca 260

                                                                       
Query: 61  acctgggacataactggaatgcagaaacataggaccggccctggtgttgtcagcagcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctgggacataactggaatgcagaaacataggaccggccctggtgttgtcagcagcaag 320

                                                                       
Query: 121 ttcatattctgccaaaacaaaagtgttctttccgaggcgtgtgaaaatgacaagagctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatattctgccaaaacaaaagtgttctttccgaggcgtgtgaaaatgacaagagctgc 380

                                                                       
Query: 181 tctgaaaccaaaggaagcttccagatgatgacctgccctggagcaggtgagattagtact 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgaaaccaaaggaagctttcagatgatgacctgccctggagcaggtgagattagtact 440

                                                                       
Query: 241 ctggagctgatagaggcgaccacatggttcatccccagtgagaacacggcctggattagc 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggagctgagagaggcgaccacatggttcatccccagtgagaacacggcctggattagc 500

                                                                       
Query: 301 accttcctcttgtcactgaccattcagggcttctgtggacttgcaggccttctcttctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accttcctcttgtcactgaccattcagggcttctgtggacttgcaggccttctcttctca 560

                                                                       
Query: 361 cttgttaatgggattttctgtcacacatggacctgtccatctatcaaggattggtactaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgttaatgggattttctgtcacacatggacctgtccatctatcaaggattggtactaa 620

                                                                       
Query: 421 gctttctgagtgcacggacttcttggatgctatcattgcatccaatgctatgataaagtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctttctgagtgcacggacttcttggatgctatcattgcatccaatgctatgataaagtc 680

                                                                 
Query: 481 tctctgagtccttcagctgtgtatcaagaatctggaaaatattctaggatctgg 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctctgagtccttcagctgtgtatcaagaatctggaaaatattctaggatctgg 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)