BAC Information

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BAC

Clone NameMSMg01-153C24
Chromosome8 (Build37)
Map Location 15,913,202 - 15,913,837
singlet/doubletsinglet
Overlap geneCsmd1
Upstream geneArhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097, EG665619, LOC634008
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153C24.T7 (MSMg01no153_c24.b1)MSMg01-153C24.TJ (MSMg01no153_c24.g1)
ACCAG354857AG354858
length712708
length of high quality
(start - end)
220 (75 - 294)641 (59 - 699)
definitionCHROMAT_FILE: MSMg01no153_c24.b1 PHD_FILE: MSMg01no153_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:30 2005CHROMAT_FILE: MSMg01no153_c24.g1 PHD_FILE: MSMg01no153_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAAT
TCTCAACTGAGTACCCTTGAAGGGTTGAGAAGCACCTAAAGAAATGTTCA
ACATCCTTAGTCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAGTCAGAATGGATAAGATTAAAAGCTCAGGTGACATCTGAT
GCTGGTGAGGATGTGGAGAAAGAACACTCCTTCATTGCTGATGGGGTTGC
AAGCTGGTACAACCATTCTGGAAATCAGTCTGGTTATTCCTCAGANNATT
GCATATACTACTAACTGAGGATCCAGCTATGCTACTCCTGGCCAATATAC
CAGAAGATGTTCTAACATATAACAAGGACCCATGCTCCACTATGTTCATA
GCAGCCATATTTATTATTAGCAAAAAGTTGGAAAGAACCCGAAGTCCCCT
AACCGAGGGATGAATTCCATAAATGGGGGAACTTTTCCCCATAGAAGAAC
TACTTCCCTTTTTTAAAAACATGGATTTTTTAAATTTCCCCGGCAAAGGG
GTGGGGTCTTAAAAAAAACCCTGGGGGGAAAAAACTCCTCGCCCAAAAAA
AACCCCCCGGGGGGGGTGTCCCCCGGAAAATTGGAATATAACGCAAAAAC
CCGGGGGAGGGCCTTAAACAACCCCCCCCCCACCAGGGGGGCTCTTTATA
GAAGAGGAAAAA
TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCCCGAATTCCATTGGTGTGTCACCAGGAAGTTTGAGAGGT
CATATCTGGTAGAAACCCTTCCTGTTAAGAAGGGGGCAGGGTGCTATTTC
TCTCCAATTGGTACCAGTTCTTGAAAAAAACGTCAGGTACATTCATTTGT
CTTGGATTATGTATTCCCACTTCTACTTTATTATGTGCTCAGAGCCCACC
CCCACTCTATCTCTCATTCAACATTCAAGCTGGGTTTTCATGGTTTTAAT
TATAGTTTTTCTAGACTCCTCCAGTGGGGGCAGCAATAAGGAGTGGTGTT
GGCTAATATTCTGAAGAAGACAAAGAACAATTTAAAAATCTCAGAGCTTC
AGGAAGATGGATATTTAAATCCTTGGACTCTTGCTTGGCACAGAAGGGAT
GCTGTGTATGCAGCAGGCCCCAGGAGAGTTGCCCCACAGCAAAAAGCTTT
CTCCTGGCAGCTGTTTCTCTATCATGCCTATGTTTATGTTCCAAGTGCAG
GAATTGTGCATCTTAGGTATATACAGAGCATGACCATACATCATTGTCTA
AGAGAAATCTGGATTTCTAGAAATCTCCCCTGCTTAGGGTAGAAACAGGA
CAAGGAATAAGGACAAAGCTATAGCTCTGAGTAGCCAATGACATTGGCTC
AGGTCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_c24.g1 MSMg01no153_c24.g1 CHROMAT_FILE:
MSMg01no153_c24.g1 PHD_FILE: MSMg01no153_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:30 2005
         (641 letters)



>mm_chr8_15912997_15914037
          Length = 1041

 Score = 1222 bits (632), Expect = 0.0
 Identities = 635/636 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccattggtgtgtcaccaggaagtttgagaggtcatatctggtagaaacccttcct 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gaattccattggtgtgtcaccaggaagtttgagaggtcatatctggtagaaacccttcct 782

                                                                       
Query: 66  gttaagaagggggcagggtgctatttctctccaattggtaccagttcttgaaaaaaacgt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gttaagaagggggcagggtgctatttctctccaattggtaccagttcttgaaaaaaacgt 722

                                                                       
Query: 126 caggtacattcatttgtcttggattatgtattcccacttctactttattatgtgctcaga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 caggtacattcatttgtcttggattatgtattcccacttctactttattatgtgctcaga 662

                                                                       
Query: 186 gcccacccccactctatctctcattcaacattcaagctgggttttcatggttttaattat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gcccacccccactctatctctcattcaacattcaagctgggttttcatggttttaattat 602

                                                                       
Query: 246 agtttttctagactcctccagtgggggcagcaataaggagtggtgttggctaatattctg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agtttttctagactcctccagtgggggcagcaataaggagtggtgttggctaatattctg 542

                                                                       
Query: 306 aagaagacaaagaacaatttaaaaatctcagagcttcaggaagatggatatttaaatcct 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aagaagacaaagaacaatttaaaaatctcagagcttcaggaagatggatatttaaatcct 482

                                                                       
Query: 366 tggactcttgcttggcacagaagggatgctgtgtatgcagcaggccccaggagagttgcc 425
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 481 tggactcttgcttggcacagaagggatgctgtgtatgcagcaggccccagcagagttgcc 422

                                                                       
Query: 426 ccacagcaaaaagctttctcctggcagctgtttctctatcatgcctatgtttatgttcca 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccacagcaaaaagctttctcctggcagctgtttctctatcatgcctatgtttatgttcca 362

                                                                       
Query: 486 agtgcaggaattgtgcatcttaggtatatacagagcatgaccatacatcattgtctaaga 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agtgcaggaattgtgcatcttaggtatatacagagcatgaccatacatcattgtctaaga 302

                                                                       
Query: 546 gaaatctggatttctagaaatctcccctgcttagggtagaaacaggacaaggaataagga 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaaatctggatttctagaaatctcccctgcttagggtagaaacaggacaaggaataagga 242

                                               
Query: 606 caaagctatagctctgagtagccaatgacattggct 641
           ||||||||||||||||||||||||||||||||||||
Sbjct: 241 caaagctatagctctgagtagccaatgacattggct 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)