BAC Information

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BAC

Clone NameMSMg01-154A18
Chromosome8 (Build37)
Map Location 12,413,585 - 12,507,066
singlet/doubletdoublet
Overlap geneEG434280
Upstream geneCol4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155, LOC100040175, EG434279, Sox1
Downstream gene1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154A18.T7 (MSMg01no154_a18.b1)MSMg01-154A18.TJ (MSMg01no154_a18.g1)
ACCAG355448AG355449
length672670
length of high quality
(start - end)		504 (43 - 546)490 (77 - 566)
definitionCHROMAT_FILE: MSMg01no154_a18.b1 PHD_FILE: MSMg01no154_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:34 2005CHROMAT_FILE: MSMg01no154_a18.g1 PHD_FILE: MSMg01no154_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,506,750 - 12,507,066)(12,413,585 - 12,414,074)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATGCTGTTGGGAGTGTGTAGTCTAAGTTCCCTACCTCAGCATCATGGA
GATTAGAAAAACAGAGAGAGTGAAGCTAAAACCTGAGGCCTCAACAGAAC
TTTCAAAGCCCTACTAGAGACCTTACAGCCTCCTCAGATAGCACAGCCAG
CCTAGGAATGGGCATTGACAAGATGAACCGTTGGGGGACATTTTAGACTC
AAGTACAACAAGAATTTCCAAAATAAGGAGGGAAGAGGATGTGGTGAAGG
AGAACGGCCCCCATGGGCTTAGATGTTTGAATGCTTGTCCCAATTAGTAG
AACTGTTTAGGAAGGAGTAGGAGGTGTGGCCTTGCTGGAGAAGTATGTTA
CTGGGGATGGGCTTTGAGGTTTCCAAAGCTCAAGCCAGGTCTAACCCCCA
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCTCTCTCTGGCTCCA
TTTTGCAGATTATATGGGAGCCCCTCGGTTCCGCTTCCGTATCGCACCTG
TCCCTCTGTTCCACCTGTTCCCATGTCTTCTGAATGAAGGCCCTGAACCC
CCCCTCTGAAACTATTAAAGAG

CGATGATGTGNTAGGCTGGCGGCGCCTGTTCCCAAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXGCTGGAGCTGTCTCAAAATAAACA
CAAATAAAATAAAGCAGTGTCTCTTTGCAGCGGCTGTCTTAAGAGTTCCC
AATATCCCATGGACAAGTAGGCTCTCCAGTAGCCAGGACACAGGGAGTTC
TGTCAAAGAATGTTTACCATCTTGTGGTCTCTGCTCACGCAGTGGCTCAT
GGTGTGAGGGAAGGTTATATCATTTGCACAGGATCATTTGTTCTAGTCTG
GTACTTTGAAGACACCCTCCTCTCCCCTGCCTCAGCTTCCATCAAATGTC
AATTCAGCCAAGGGGCCGTGGAGATGGCCCAGCAGTTGAGCACTTCTTGT
TCTGGCAGAGAATCCTAGTTTGATTTTCTGCACCCACAGAGCAGCTAACA
ACCAAGTGTAACTCCAGTTCCATGAGAGCTGGTGTTCCTCTCCGACCTCT
TCTGGGCACCAGACACAAATGTGGGTCACAGACACATATACAGGCAAAAC
ACTCCCATACATAAGAACAGTTAAATTTTTAAAAATCTATTGGAAAAACC
AAATATGGTGGCCTATAGCCATTATCCTAGCCTGTGAGCTATGGCCCAGA
GATGAGGAGTTTGAGAGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_a18.b1 MSMg01no154_a18.b1 CHROMAT_FILE:
MSMg01no154_a18.b1 PHD_FILE: MSMg01no154_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:34 2005
         (504 letters)



>mm_chr8_12506750_12507653
          Length = 904

 Score =  582 bits (301), Expect = e-170
 Identities = 313/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatgctgttgggagtgtgtagtctaagttccctacctcagcatcatggagatta 63
           |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 317 ggaagtcatgctgttgggagtgtgtggtctaagttccctacctcagcatcatggagatta 258

                                                                       
Query: 64  gaaaaacagagagagtgaagctaaaacctgaggcctcaacagaactttcaaagccctact 123
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gaaaaacagagagagtgaagccaaaacctgaggcctcaacagaactttcaaagccctact 198

                                                                       
Query: 124 agagaccttacagcctcctcagatagcacagccagcctaggaatgggcattgacaagatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 197 agagaccttacagcctcctcagatagcacagccagcctaggaatgggcactgacaagatg 138

                                                                       
Query: 184 aaccgttgggggacattttagactcaagtacaacaagaatttccaaaataaggagggaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 aaccgttgggggacattttagactcaagtacaacaagaatttccaaaataaggagggaag 78

                                                                       
Query: 244 aggatgtggtgaaggagaacggcccccatgggcttagatgtttgaatgcttgtcccaatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  aggatgtggtgaaggagaacggcccccatgggcttagatgtttgaatgcttgtcccaatt 18

                            
Query: 304 agtagaactgtttagga 320
           |||||||||||||||||
Sbjct: 17  agtagaactgtttagga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no154_a18.g1 MSMg01no154_a18.g1 CHROMAT_FILE:
MSMg01no154_a18.g1 PHD_FILE: MSMg01no154_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:34 2005
         (490 letters)



>mm_chr8_12413385_12414274
          Length = 890

 Score =  924 bits (478), Expect = 0.0
 Identities = 487/490 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctggagctgtctcaaaataaacacaaataaaataaagcagtgtctctttgcagcggctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctggagctgtctcaaaataaacacaaataaaataaagcagtgtctctttgcagcggctg 260

                                                                       
Query: 61  tcttaagagttcccaatatcccatggacaagtaggctctccagtagccaggacacaggga 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttaagagttctcaatatcccatggacaagtaggctctccagtagccaggacacaggga 320

                                                                       
Query: 121 gttctgtcaaagaatgtttaccatcttgtggtctctgctcacgcagtggctcatggtgtg 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttctgacaaagaatgtttaccatcttgtggtctctgctcacgcagtggctcatggtgtg 380

                                                                       
Query: 181 agggaaggttatatcatttgcacaggatcatttgttctagtctggtactttgaagacacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggaaggttatatcatttgcacaggatcatttgttctagtctggtactttgaagacacc 440

                                                                       
Query: 241 ctcctctcccctgcctcagcttccatcaaatgtcaattcagccaaggggccgtggagatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcctctcccctgcctcagcttccatcaaatgtcaattcagccaaggggccgtggagatg 500

                                                                       
Query: 301 gcccagcagttgagcacttcttgttctggcagagaatcctagtttgattttctgcaccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcccagcagttgagcacttcttgttctggcagagaatcctagtttgattttctgcaccca 560

                                                                       
Query: 361 cagagcagctaacaaccaagtgtaactccagttccatgagagctggtgttcctctccgac 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 cagagcagctaacaaccaagtgtaactcctgttccatgagagctggtgttcctctccgac 620

                                                                       
Query: 421 ctcttctgggcaccagacacaaatgtgggtcacagacacatatacaggcaaaacactccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcttctgggcaccagacacaaatgtgggtcacagacacatatacaggcaaaacactccc 680

                     
Query: 481 atacataaga 490
           ||||||||||
Sbjct: 681 atacataaga 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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