Query= MSMg01no154_c18.b1 MSMg01no154_c18.b1 CHROMAT_FILE:
MSMg01no154_c18.b1 PHD_FILE: MSMg01no154_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:44 2005
(631 letters)
>mm_chr8_7084236_7085267
Length = 1032
Score = 1060 bits (548), Expect = 0.0
Identities = 608/628 (96%), Gaps = 1/628 (0%)
Strand = Plus / Minus
Query: 5 gaattcacttctagtcctctgaatgagcagcaagtgctgctaactccttagccaccttgc 64
|||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 899 gaattcacttctagtcttctgaatgagcagcaagggctgctaactcctgagccaccttgc 840
Query: 65 aatcccctgcttccaactattgaaggacctcagtccactatcttggtgtgtcttgaagtt 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 839 aatcccctgctttcaactattgaaggacctcagtccactatcttggtgtgtcttgaattt 780
Query: 125 gtgtcagaaggtgtgaaggtagacatgccacacactggttacatagacagctaaggtgct 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 779 gtgtcagaaggtgtgaaggtagacatgccacacactggttacctagacagctaaggtgct 720
Query: 185 ttgtttccattgattcctcagtgacactgcattaaaaactctgtgagatgagccacccct 244
|||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 719 ttgtttccatccattcctcagtgacactgcattaaaaagtctgtgagatgagccatgcct 660
Query: 245 ggtagtttaacaggatccatactggcatttca-tttaaatcacaataaatataactccac 303
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 659 ggtagtttaacagaatccatactggcatttcattttaaatcacaataaatataactccac 600
Query: 304 tactcttgaaatacctaattttattacactgttaaataacacactactacattatacctg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tactcttgaaatacctaattttattacactgttaaataacacactactacattatacctg 540
Query: 364 cattttgaccaacaatttttaatacaaatgtctgtcttcataattcttagtactaaacca 423
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 539 cattttgaccaacaatttttaatacagaggtctgtcttcataattcttagtactaaacca 480
Query: 424 atctgagaaatgcacttttaccaaactgtcagccaggaatcttgaataacagacacaagg 483
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 atcacagaaatgcacttttaccaaactgtcagccaggaatcttgaataacagacacaagg 420
Query: 484 ttgttcaacactatcagaaatattcttctgtgttgcctaaaacctaatggcatgactttc 543
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 419 ttgttcaacactatcagaaatattcttctgtgttgcctaaaatctaatggcatgactttc 360
Query: 544 cactaattcataacttcattatctccttaatcataatggtaatattccttaaatcttcta 603
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cactaattcatatctttattatctccttaatcataatggtaatattccttaaatcttcta 300
Query: 604 tactacaaatccactttaacatttaatc 631
||||||||||||||||||||||||||||
Sbjct: 299 tactacaaatccactttaacatttaatc 272
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1032
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1022
Effective search space: 634662
Effective search space used: 634662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_c18.g1 MSMg01no154_c18.g1 CHROMAT_FILE:
MSMg01no154_c18.g1 PHD_FILE: MSMg01no154_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:44 2005
(587 letters)
>mm_chr8_6915485_6916471
Length = 987
Score = 1081 bits (559), Expect = 0.0
Identities = 580/587 (98%), Gaps = 2/587 (0%)
Strand = Plus / Plus
Query: 1 ttcattatctctttctccttttattcaggtcttaagtatctaagtcaagcaactaattat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcattatctctttctccttttattcaggtcttaagtatctaagtcaagcaactaattat 260
Query: 61 gcatgccaattttacattctgagatatgctgtggggtctaaagaaggttattttaaagaa 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaagccaattttacattctgagatatgctgtggggtctaaagaaggttattttaaagaa 320
Query: 121 taatattaattacatataaaatcaccagtctggttatttaataacattgttactttttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatattaattacatataaaatcaccagtctggttatttaataacattgttactttttaa 380
Query: 181 aaataatcattttgatattttaaaacatgtaaactgatatattcataaatttcacatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaataatcattttgatattttaaaacatgtaaactgatatattcataaatttcacatata 440
Query: 241 taaaatattaaattcatttctgcaattatttactaaaatgagtcttttttttaaatacta 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 taaaatattaaattcatttctgcaattatttactaaaatgagtcttttttttaa-tacta 499
Query: 301 tatgtaccaaaagatacataagcatacagtaaatgattatgagcaacacaacacatatct 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tatgtaccacaagatacataagcatacagtaaatgattatgagcaacacaacacatatct 559
Query: 361 taatgggagaaaataaccaaactctgcagcttattttatgaactatcacagcatggggta 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 taatgggagaaaataaccaaactctgcagcttactttatgaactatcacagcatggggta 619
Query: 421 ctgcaggcatattctattcagcatggtcctttatagaatttgtattctaattagataaaa 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctgcaggcatattctaatcagcatggtcctttatagaatttgtattctaattagataaaa 679
Query: 481 catgtaagattttaaaattaaaaaagtaactttaagtataagtggaagaaagtgacttca 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 680 catgtaagattttaaaattaaaaaagtaactttaagtatgagtggaagaaagtgacttca 739
Query: 541 aaatggtcctttttttcatgcatttcatttctgattttatttgaaat 587
||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 740 aaatggtcctttttt-catgcatttcatttctgattttatttgaaat 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
