BAC Information

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BAC

Clone NameMSMg01-154C22
Chromosome8 (Build37)
Map Location 105,192,173 - 105,192,576
singlet/doubletsinglet
Overlap geneCdh11
Upstream genenone
Downstream geneEG667618, LOC100041368, 1600027J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154C22.T7 (MSMg01no154_c22.b1)MSMg01-154C22.TJ (MSMg01no154_c22.g1)
ACCAG355550AG355551
length692691
length of high quality
(start - end)
632 (43 - 674)583 (73 - 655)
definitionCHROMAT_FILE: MSMg01no154_c22.b1 PHD_FILE: MSMg01no154_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:45 2005CHROMAT_FILE: MSMg01no154_c22.g1 PHD_FILE: MSMg01no154_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:45 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCTGAGGACTACCGAATGGCAGAGAAGCACCTGAAAAAATGCTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAT
TGCAGGCTTGTACAACCACTCTGGAGATAAGTCATTTTAACATGGCAAAC
ATAGCAGAAAGTGTTGAAGATAACACCTGTGTATTATCAAGCAAATAATA
AAAATTACTTACAACATATTACTTTTTTTTTAACTCTGCATGCAAGTAAC
AATGTCTTCCCTCTCAGACACAAGAATCCTGAAGACTGAAATGACAAGAG
CCTATTGTATGATAAGTCATATCTGAATCTATACTTCAGGACTTCTAGCA
AAAAGCTTCAGAAATCAAGTCCTACATAAACTAGTAGAAACATCACTATG
GGGTTGTAGAGATGGCTCAGCAGTTAAGAGCACTGACTGTTCTGCCAGAG
GTCCTGGGTTCAATTCCCAGCAACCACATGGTGGCTCACAATCATCTGTA
GTGGGATCCGATGCACTCGTCTAGTGTGTGTCTGAAGACAGA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAATTCAGGTCATAAAGACAGGAGAGG
ACACATTTTGTCCTTTCTTTTTATGTCTTTCCATTTTGTAGAGAATGATG
ATGTGAGGTAGCAAAGAGCAGAAGATAAAAGCATAACACTAAGCAGGTCC
CCATCAAAGATTTCTAGATACTCTGGGCCTTTTACTCATCATGCAGAAAG
GAAGCAGAGGTTGCTAAATATCAGATAGTGTCCTTAGTGATGAAGTTGGT
CTGAATACAGAAACATTTTGGGGACTATAAATCAAGATTCTGACATTAGC
AGACAGGTGATAAAATGAATAAAATCAGTGAAACTTTAAATCAAAAGTAA
CATTGCCAATTTTCCTTATAGGTGCGAGGAAATAAACCACCTATTTTCCG
TACCTTTCCTCGGAAGCATAGAATTCATGTGCTTGAGGCTCCTGGTGACA
TTGAGCCAACTCATTCCACCTGTGCTGCTGACAACAGGGCTCCTGCTGAT
GCTGAGCCAAATTCTTCCACCTGTGCTGCTGTCAATGGGGCTCCTGCTGG
TGTTGAGCCAACTACTTCTTCCCAGTGTGCTCCTGACTGTGAGGATCCTG
CAGTCATTGAGCCAACTCATTCCACCTGTGCTGCTGACAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_c22.b1 MSMg01no154_c22.b1 CHROMAT_FILE:
MSMg01no154_c22.b1 PHD_FILE: MSMg01no154_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:45 2005
         (632 letters)



>mm_chr8_105191744_105192776
          Length = 1033

 Score =  563 bits (291), Expect = e-164
 Identities = 373/405 (92%), Gaps = 10/405 (2%)
 Strand = Plus / Plus

                                                                       
Query: 237 aagtcattttaacatggcaaacatagcagaaagtgttgaagataacacctgtgtattatc 296
           ||||||||||||||||||||||||| ||||||| |||||||||||||||| || ||||||
Sbjct: 430 aagtcattttaacatggcaaacataacagaaagcgttgaagataacacctatg-attatc 488

                                                                       
Query: 297 aagcaaataataaaaattacttacaacatatta--------ctttttttt-taactctgc 347
           |||||||||||||||||||||||||||||||||         |||||||| | |||||||
Sbjct: 489 aagcaaataataaaaattacttacaacatattaattagttgtttttttttctcactctgc 548

                                                                       
Query: 348 atgcaagtaacaatgtcttccctctcagacacaagaatcctgaagactgaaatgacaaga 407
           |||||||||||||||||||||||  |||| ||||||||||||||||||| ||||| ||||
Sbjct: 549 atgcaagtaacaatgtcttccctaacagagacaagaatcctgaagactggaatgataaga 608

                                                                       
Query: 408 gcctattgtatgataagtcatatctgaatctatacttcaggacttctagcaaaaagcttc 467
           ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 609 gcctattgtgtgataagtcatatctgaatctatacttcgggacttctagcaaaaagcttc 668

                                                                       
Query: 468 agaaatcaagtcctacataaactagtagaaacatcactatggggttgtagagatggctca 527
           ||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 669 agaaatcaagtcctaaatgaactagtagaaacatcactatggggttggagagatggctca 728

                                                                       
Query: 528 gcagttaagagcactgactgttctgccagaggtcctgggttcaattcccagcaaccacat 587
           || ||||||||||||||||| |||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 729 gcggttaagagcactgactgctctgacagaggtcctgagttcaattcccagcaactacat 788

                                                        
Query: 588 ggtggctcacaatcatctgtagtgggatccgatgcactcgtctag 632
           |||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 789 ggtggctcacaatcatctgtagtgggatccaatgcacttgtctag 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1033
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1023
Effective search space:   636306
Effective search space used:   636306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)