BAC Information

Click to search

BAC

Clone NameMSMg01-154L18
Chromosome8 (Build37)
Map Location 53,088,840 - 53,089,274
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667517, LOC623872
Downstream geneLOC100040220, LOC623935, 1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154L18.T7 (MSMg01no154_l18.b1)MSMg01-154L18.TJ (MSMg01no154_l18.g1)
ACCAG355946AG355947
length726721
length of high quality
(start - end)
462 (40 - 501)466 (62 - 527)
definitionCHROMAT_FILE: MSMg01no154_l18.b1 PHD_FILE: MSMg01no154_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:27 2005CHROMAT_FILE: MSMg01no154_l18.g1 PHD_FILE: MSMg01no154_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GACCTGACCAAAATCGAATGGCTGAGAAGCACCTGTAAAAATGTTCAGTA
TCCTTAATCATCAGGGAAATGCAAGTCAAAACAATGCTGGGATTCCACCT
CACACAATTCAGAATGGCTAAGATCAAAAATTCAGATGACAGCAGATGCT
GGTGAGGATGTGGAGAAAGAGGAACACTCCTTCATTATTGGTGGGATTGC
AAGCTTGTACAACCACTCTGGAAATCAGTCTGGAGGTTCCTCAGAACATT
GGACATAGTACTACTGGAGGATCTTTCAATACCTCTCCTGGGCATATATC
CAGAAGATGTTCCAACTGGTAAGAAGGACACATGCTCCACTACTTTCATA
GCAGCCTTATTTATAAGAGCCAGAAGCTGGAAAGAACCCAGATTTCCCCT
CAACAGAGGAATGGATACTGAAAATCTGGTACATTTACACAATGGAGTAC
TACTCAGCTATTACATAGAATGAATTTATAAAATTCCTAGGCAAATGGAT
GGACCTGGAGGGCATCATGCTGATTGAGGTACCCCGATCACAAAGGAATT
CACATGATATGTATTTCCTGATAAGCGGATATTACCCCTGAAATCTAGAA
TATCTTAGATACATAGATACAATTTGCTAACCATTTGTAACTCTATATGA
ACAAAGACCAATGTGCATATCATTTG
TGTGGGAGGCCTGGCGGCCGCCTTTTCAACAAATGTAGGTGACCTATAGA
ATTTCAGAAAAATTCCTTGTTTAGCTCTCTACCCCATTTCTGTTCTCTGG
AATCTAATTTTTCCAGTTCTTTGTATAATTTTGATATTAGCCCTCTATCA
GATGTAGGGTTGGTAAAATTCTTTTCCCAATCTGTGGGAAAGATTGCCCT
GTTGACAGTGCCCTTTGCCTTACAGAAGCTTTTCAATTTATGAGGTCCTA
ATTTCTAATTTTTGATCTTAGAGAATAAACCATTGGTGTTCTGTTCAGGA
AATTATCCCCTGAACCTTGAAAACATCATGCTACTTTTAATTAATTACTA
AAGAGTAAGGGCTGCCTGTAATAATATCAAAAGTACTTTGAGTAGATATA
TATTTCTTCTATAAAGTACATATGAGAAAACTATATTATATTGTTGATTA
TTGTTACAACCCCTTTAAGTTTACCTGTCCCATGACATATATTTAATTTG
TATACACACACACACACACACACACACACTCTTATACACACACATATACA
CACACTCATACAGAGACAGAAATAGAGAGAGAGTCATATAGATATAGACA
CTTATAACAAAAATTAACTTTAAAAAATGCCATGGAATTGAAGGAGATCA
AGTAAGGTTATATAGGAAGGTTTTAAAATTTTTAACGAGAGAGGAGAAAT
GTTACCACTCCATTATCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_l18.g1 MSMg01no154_l18.g1 CHROMAT_FILE:
MSMg01no154_l18.g1 PHD_FILE: MSMg01no154_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:27 2005
         (466 letters)



>mm_chr8_53088409_53089274
          Length = 866

 Score =  762 bits (394), Expect = 0.0
 Identities = 423/440 (96%), Gaps = 13/440 (2%)
 Strand = Plus / Minus

                                                                       
Query: 35  tctggaatctaatttttccagttctttgtataattttgatattagccctctatcagatgt 94
           |||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 866 tctggaatctaattttttgagttctatgtataattttgatattagccctctatcagatgt 807

                                                                       
Query: 95  agggttggtaaaattcttttcccaatctgtggg--------aaagattgccctgttgaca 146
           |||||||||||||||||||||||||||||||||             ||||||||||||||
Sbjct: 806 agggttggtaaaattcttttcccaatctgtgggttgctgtt-----ttgccctgttgaca 752

                                                                       
Query: 147 gtgccctttgccttacagaagcttttcaatttatgaggtcctaatttctaatttttgatc 206
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 751 gtgccctttgccttacagaagcttttcaatttatgaggtcctaatttttaatttttgatc 692

                                                                       
Query: 207 ttagagaataaaccattggtgttctgttcaggaaattatcccctgaaccttgaaaacatc 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttagagaataaaccattggtgttctgttcaggaaattatcccctgaaccttgaaaacatc 632

                                                                       
Query: 267 atgctacttttaattaattactaaagagtaagggctgcctgtaataatatcaaaagtact 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 atgctacttttaattaattactaaagagtaagggctgcctgtaataatatcaaaagtact 572

                                                                       
Query: 327 ttgagtagatatatatttcttctataaagtacatatgagaaaactatattatattgttga 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttgagtagatatatatttcttctataaagtacatatgagaaaactatattatattgttga 512

                                                                       
Query: 387 ttattgttacaacccctttaagtttacctgtcccatgacatatatttaatttgtatacac 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttattgttacaacccctttaagtttacctgtcccatgacatatatttaatttgtatacac 452

                               
Query: 447 acacacacacacacacacac 466
           ||||||||||||||||||||
Sbjct: 451 acacacacacacacacacac 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)