BAC Information

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BAC

Clone NameMSMg01-154O11
Chromosome8 (Build37)
Map Location 103,710,179 - 103,799,944
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042086, LOC100042092, LOC384895
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154O11.T7 (MSMg01no154_o11.b1)MSMg01-154O11.TJ (MSMg01no154_o11.g1)
ACCAG356066AG356067
length686686
length of high quality
(start - end)		613 (57 - 669)608 (73 - 680)
definitionCHROMAT_FILE: MSMg01no154_o11.b1 PHD_FILE: MSMg01no154_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:40 2005CHROMAT_FILE: MSMg01no154_o11.g1 PHD_FILE: MSMg01no154_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,799,332 - 103,799,944)(103,710,179 - 103,710,786)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTGTAATCTTTTTCATCATAGCTCTACCAAGCTTTGTTTTATATC
TGAAACTTCACATAAACACTCACCTTTATTGTTTATCCTTTCTACACCAG
GATATACTTCCTTTCCTGTTAGATTTAGTAGTTCATTCTGTGACTGTTTC
TTTAAATCCATTAGCCATTTTGGCATCCTTTGCCAGTCTCGGTTTCTGTC
AAAACCCACCTCAACATGGATAGAAATATTAACGTTTAGACTTCTGTGAG
GCTTTGTCAGGAAGTTGACCATGGAGCCATCACTACAGCATGATACCATA
TGGAAGCAAAGGTGACTCAATTTCAGAAGCAGTTATCTAATTTTATGGAA
GCTCTTAGTGCACTGGAAAGAGATAGTGAGTAGAAAAGCAGAAAATATAA
TCGATCCAGTTTAGAAAGATTCCAGTAGCCACACTGAATTAGCAAAAAGG
AATTCAGAGAAAAACAAATGGAACTGTGTTCCCCTTGAGTCCTGTACAGA
ACAAAAGAAGGATGGAAATGAACTATCTAGACATCATTTGTATAAACCAG
CCTCAGTATTTCCAGGATGGAGCTTTAGGCAAGACGGAGAACATATGTTT
ACATCCTATACTTCTCAGCCATGTGCTTTAGTAATG

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATAAAAATACATTTTAAAAATAAGGAAC
TACTGATGCATGAGACACATTGGATAAATGCTAGAAACTTGCTGAAAGTT
TTTAAATAAAAACATAAATACTTACAACCTAGGTCTATGGAATTGTGAAT
AGTATGAGGATAGGAACACCTCATGGTAAAGTGACATTCTGAGTTGCGCC
TTCATTGACTCAGGAGTGATGAGAGAAATAATACTGAAATTTATCTGCAC
TATGTAGAATCATGCAACGTAAGAATTTGAGAAAGATGATGCATTTCCAG
ATGGCAGCTATGCATTGTCTTTCTATTCTTGAAATATATAGGCAAATTCT
GGAATGAGTTCTCGCTTGTCTATAAATTAGAGAGTCATTAGCATTAAATG
AGAAATATAACTATGGCAGTGGATGAGATCGCCCATTTGGAGATATTTGA
AATAGGAAAGAAACTACCTGGGAACACTTATAACCATAGGTATTTATGGA
ATAGACAGAGGAAGCCCATTCTCTAAAGAAGGCACAGAAAGTTTAAAGAG
TAATGAAGAAAAAAAAAAGATAAATTACTAAAGTCAACAGAATAGAGACC
TTTCAGAAAGGCAGCATCAATAGCACCAAATGCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_o11.b1 MSMg01no154_o11.b1 CHROMAT_FILE:
MSMg01no154_o11.b1 PHD_FILE: MSMg01no154_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:40 2005
         (613 letters)



>mm_chr8_103799132_103800144
          Length = 1013

 Score = 1178 bits (609), Expect = 0.0
 Identities = 612/613 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaatctttttcatcatagctctaccaagctttgttttatatctgaaacttcacataaa 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tgtaatttttttcatcatagctctaccaagctttgttttatatctgaaacttcacataaa 754

                                                                       
Query: 61  cactcacctttattgtttatcctttctacaccaggatatacttcctttcctgttagattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 cactcacctttattgtttatcctttctacaccaggatatacttcctttcctgttagattt 694

                                                                       
Query: 121 agtagttcattctgtgactgtttctttaaatccattagccattttggcatcctttgccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 agtagttcattctgtgactgtttctttaaatccattagccattttggcatcctttgccag 634

                                                                       
Query: 181 tctcggtttctgtcaaaacccacctcaacatggatagaaatattaacgtttagacttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tctcggtttctgtcaaaacccacctcaacatggatagaaatattaacgtttagacttctg 574

                                                                       
Query: 241 tgaggctttgtcaggaagttgaccatggagccatcactacagcatgataccatatggaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgaggctttgtcaggaagttgaccatggagccatcactacagcatgataccatatggaag 514

                                                                       
Query: 301 caaaggtgactcaatttcagaagcagttatctaattttatggaagctcttagtgcactgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 caaaggtgactcaatttcagaagcagttatctaattttatggaagctcttagtgcactgg 454

                                                                       
Query: 361 aaagagatagtgagtagaaaagcagaaaatataatcgatccagtttagaaagattccagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aaagagatagtgagtagaaaagcagaaaatataatcgatccagtttagaaagattccagt 394

                                                                       
Query: 421 agccacactgaattagcaaaaaggaattcagagaaaaacaaatggaactgtgttcccctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agccacactgaattagcaaaaaggaattcagagaaaaacaaatggaactgtgttcccctt 334

                                                                       
Query: 481 gagtcctgtacagaacaaaagaaggatggaaatgaactatctagacatcatttgtataaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gagtcctgtacagaacaaaagaaggatggaaatgaactatctagacatcatttgtataaa 274

                                                                       
Query: 541 ccagcctcagtatttccaggatggagctttaggcaagacggagaacatatgtttacatcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ccagcctcagtatttccaggatggagctttaggcaagacggagaacatatgtttacatcc 214

                        
Query: 601 tatacttctcagc 613
           |||||||||||||
Sbjct: 213 tatacttctcagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no154_o11.g1 MSMg01no154_o11.g1 CHROMAT_FILE:
MSMg01no154_o11.g1 PHD_FILE: MSMg01no154_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:40 2005
         (608 letters)



>mm_chr8_103709979_103710986
          Length = 1008

 Score = 1091 bits (564), Expect = 0.0
 Identities = 597/608 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaaaatacattttaaaaataaggaactactgatgcatgagacacattggataaatgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaaaatacattttaaaaataaggaactactgatgcatgagacacattggataaatgct 260

                                                                       
Query: 61  agaaacttgctgaaagtttttaaataaaaacataaatacttacaacctaggtctatggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 agaaacttgctgaaagtttttaaataaaaacataaatacttacaatctaggtctatggaa 320

                                                                       
Query: 121 ttgtgaatagtatgaggataggaacacctcatggtaaagtgacattctgagttgcgcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtgaatagtatgaggataggaacacctcatggtaaagtgacattctgagttgcgcctt 380

                                                                       
Query: 181 cattgactcaggagtgatgagagaaataatactgaaatttatctgcactatgtagaatca 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 cattgactcaggagtgatgagagaaataatactgaaatgtatctgcactatgtagaatca 440

                                                                       
Query: 241 tgcaacgtaagaatttgagaaagatgatgcatttccagatggcagctatgcattgtcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcaacgtaagaatttgagaaagatgatgcatttccagatggcagctatgcattgtcttt 500

                                                                       
Query: 301 ctattcttgaaatatataggcaaattctggaatgagttctcgcttgtctataaattagag 360
           |||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||
Sbjct: 501 ctattcttgaaatatataggcaaattccagagtgagttctcgcttgtctataaattagag 560

                                                                       
Query: 361 agtcattagcattaaatgagaaatataactatggcagtggatgagatcgcccatttggag 420
           |||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 561 agtcatgagcattaaatgagaaatataactatgggagtggatgagatcacccatttggag 620

                                                                       
Query: 421 atatttgaaataggaaagaaactacctgggaacacttataaccataggtatttatggaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atatttgaaataggaaagaaactacctgggaacacttataaccataggtatttatggaat 680

                                                                       
Query: 481 agacagaggaagcccattctctaaagaaggcacagaaagtttaaagagtaatgaagaaaa 540
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 agacagaggaagcccattctctgaagaaggcacagaaagtttaaagagtaatgaagaaaa 740

                                                                       
Query: 541 aaaaaagataaattactaaagtcaacagaatagagacctttcagaaaggcagcatcaata 600
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 741 aaaaaagataaatcactaaagtcaacagaatagagacctttcagaaaggcagcatcaatg 800

                   
Query: 601 gcaccaaa 608
           ||||||||
Sbjct: 801 gcaccaaa 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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