Query= MSMg01no155_j18.b1 MSMg01no155_j18.b1 CHROMAT_FILE:
MSMg01no155_j18.b1 PHD_FILE: MSMg01no155_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:33 2005
(348 letters)
>mm_chr8_65663520_65664267
Length = 748
Score = 615 bits (318), Expect = e-180
Identities = 342/350 (97%), Gaps = 4/350 (1%)
Strand = Plus / Plus
Query: 1 aagtgatatgttctgttctaagatcattttgtgagtcaaataagggaagcaaaacccaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 aagtgatatgttctgttctaagatcattttgtgagtcaaataagggaagcaaa-cccaat 259
Query: 61 ccgctagagttctgaattagtaggatgcttaaaatcatatgctatttatttaagcaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccgctagagttctgaattagtaggatgcttaaaatcatatgctatttatttaagcaggaa 319
Query: 121 aataaaattgatgaacacactgtcataaacgatgttttagtaaataaaaatgtcaccaat 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 320 aataaaattgatgaacacactgtcataaatgatgttttagtaaataaaaatgtcaccaat 379
Query: 181 ttt-atttacaaaatttgagaaatatatatgtaatgttgttgggcttttaaatgcaaaat 239
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 380 ttttatttacaaaatttgagaaatatatatgtaatgttgttgggtttttaaatgcaaaat 439
Query: 240 atacagagcactccctgggttaactacccag-taatggcttttgagaaaaccaataactg 298
||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct: 440 atacagagcactccctgggttaactacccagcta-tggcttttgagaaaaccagtaactg 498
Query: 299 ttataattgagaagcgagtgagtgataatatttgattttaaaaaggcagg 348
||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 499 ttataattgagaagcgagtgagtgacaatatttgattttaaaaaggcagg 548
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space: 250521
Effective search space used: 250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no155_j18.g1 MSMg01no155_j18.g1 CHROMAT_FILE:
MSMg01no155_j18.g1 PHD_FILE: MSMg01no155_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:33 2005
(587 letters)
>mm_chr8_65803702_65804687
Length = 986
Score = 687 bits (355), Expect = 0.0
Identities = 376/383 (98%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 205 aaaagggtatgtgcctaatgggctcggcttggcttgctgccatcttgaatggtgatctca 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 aaaagggtatgtgcctaatgggctcggcttggcttgctgccatcttgaatggtgatctca 927
Query: 265 ttagaatagaagcatttcatgggactttagtgccattttggttaagatgatcatgtagtg 324
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 ttaggatagaagcatttcatgggactttagtgccattttggttaagatgatcatgtagtg 867
Query: 325 tccctctagtgatgattgtattgcttattttacagtaaggaaaaacgaccaggcttctaa 384
|||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 866 tccctctagtgatgattgcattgcttattttacaggaaggaaaaaagaccaggcttctaa 807
Query: 385 caattggatcatacaaaaacaaacaaaaatattttgctaactttaataaggtttagcaat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 caattggatcatacaaaaacaaacaaaaatattttgctaactttaataaggtttagcaat 747
Query: 445 ttggtaaaagttcattataaaaaactttttctatccttgttaagatttagctatttggtg 504
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttggtaaaagttcattataaaaa-ctttttctatccttgttaagatttagctatttggtg 688
Query: 505 aaacttagtcatataaaaactgtaatatttttactatcttggctaagttttagatatttg 564
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 687 aaacttagtcatataaaaactgtaatatttttactatcttggttaagttttagatatttg 628
Query: 565 gagaaactcagtcctatataaaa 587
||||||||||||| |||||||||
Sbjct: 627 gagaaactcagtcatatataaaa 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 986
Length adjustment: 10
Effective length of query: 577
Effective length of database: 976
Effective search space: 563152
Effective search space used: 563152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
